View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11985_high_2 (Length: 797)

Name: NF11985_high_2
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11985_high_2
NF11985_high_2
[»] chr7 (1 HSPs)
chr7 (457-790)||(46795063-46795402)
[»] chr2 (3 HSPs)
chr2 (117-220)||(38696356-38696459)
chr2 (330-369)||(4636879-4636918)
chr2 (331-361)||(14849234-14849264)
[»] chr8 (1 HSPs)
chr8 (121-442)||(10124167-10124489)
[»] chr3 (9 HSPs)
chr3 (269-442)||(22350291-22350464)
chr3 (269-369)||(43073861-43073961)
chr3 (330-369)||(52612945-52612984)
chr3 (330-369)||(31524768-31524807)
chr3 (161-196)||(42773709-42773744)
chr3 (93-220)||(43073684-43073811)
chr3 (169-220)||(55167344-55167395)
chr3 (327-369)||(55167503-55167545)
chr3 (235-291)||(11821783-11821840)
[»] chr1 (2 HSPs)
chr1 (238-441)||(4863415-4863619)
chr1 (327-369)||(38548083-38548125)
[»] chr5 (7 HSPs)
chr5 (109-220)||(6316515-6316626)
chr5 (129-188)||(11239385-11239444)
chr5 (121-218)||(2291670-2291767)
chr5 (129-194)||(36517546-36517611)
chr5 (269-442)||(10430264-10430437)
chr5 (235-291)||(19110016-19110073)
chr5 (333-369)||(1160526-1160562)
[»] chr6 (1 HSPs)
chr6 (333-392)||(14459371-14459430)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 457 - 790
Target Start/End: Original strand, 46795063 - 46795402
Alignment:
Q  457 acccatgcaataaacgctcgatcagattgaacaacacaaacgaaaaaaccctcttccgtctctcaagtctcaacttcctttcatccattcatattatttt 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795063 acccatgcaataaacgctcgatcagattgaacaacacaaacgaaaaaaccctcttccgtctctcaagtctcaacttcctttcatccattcatattatttt 46795162  T
Q  557 cgtggtgagttcgtagttataatttcgttcttaccttttcatggcttcttttgattggttcagtaatttatgttttctggatttcaaatcaatcaatcaa 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795163 cgtggtgagttcgtagttataatttcgttcttaccttttcatggcttcttttgattggttcagtaatttatgttttctggatttcaaatcaatcaatcaa 46795262  T
Q  657 tttatgttttctgtaattttgtgtctttcgttttaccctgacca------caaccccaaccccaacccttgttttgttactggaaaatggaaagctgatg 750  Q
    |||||||||||||||||||| ||||||| |||||||||||||||      ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46795263 tttatgttttctgtaattttatgtcttttgttttaccctgaccacaaccccaaccccaaccccaacccttgttttgttattggaaaatggaaagctgatg 46795362  T
Q  751 atagaagaaatttaggcattgtgatttgtgatgtccatct 790  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  46795363 atagaagaaatttaggtattgtgatttgtgatgttcatct 46795402  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 38696356 - 38696459
Alignment:
Q  117 gggactccattcccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaacactttaatctcatcaacaacctcgtcc 216  Q
    ||||||||| |||||||| |||||||||||||| || |||||||| ||||| |||| ||||||||||||||| || || ||||| || || || ||||||    
T  38696356 gggactccactcccactcataaaacaaacaagctgggaccttaaacctccccaacaaccacctccaagacaaaaccttgatctcgtctaccacttcgtcc 38696455  T
Q  217 cacc 220  Q
    ||||    
T  38696456 cacc 38696459  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 4636879 - 4636918
Alignment:
Q  330 ccactccaacactcccaatgaataaacaaatttggcggca 369  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4636879 ccactccaacactcccaatgaataaacaaattaggcggca 4636918  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 14849234 - 14849264
Alignment:
Q  331 cactccaacactcccaatgaataaacaaatt 361  Q
    |||||||||||||||||||||||||||||||    
T  14849234 cactccaacactcccaatgaataaacaaatt 14849264  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 442
Target Start/End: Complemental strand, 10124489 - 10124167
Alignment:
Q  121 ctccattcccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaacactttaatctcatcaacaacctcgtcccacc 220  Q
    ||||| ||||||||||| |||| |||||||||  | || || || || |||| ||||||||||||||| || |||||||| || || || ||||||||||    
T  10124489 ctccactcccactcgtataacatacaagccggtcctttgaaccttcccaacaaccacctccaagacaaaaccttaatctcttccaccacttcgtcccacc 10124390  T
Q  221 gtttcactatcaa-attgaaaatactatcatttctagctctccacgta-cccaaattgccgcttgccaaatcaacaacaacccctttctaattttcttat 318  Q
       | | || |   ||||||||||| ||| || || ||| ||||| || |||||||  |||||||||||||||    ||| ||||| | ||| || ||||    
T  10124389 taatga-taccggcattgaaaatacaatcgttcctcgctttccacatagcccaaataaccgcttgccaaatcattctcaagcccttccgaatctttttat 10124291  T
Q  319 gcaggtgacctccactccaacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaatccataagtttttgccaaattttcat 418  Q
    |||    ||| ||||||||||||||||||||||||| ||| ||||| ||||  | |||||| || |  ||||| ||||| || ||  ||||||||||| |    
T  10124290 gcatcacaccgccactccaacactcccaatgaataaccaagtttggaggcattataaaattcaaattcaaccattccattagattcagccaaattttcct 10124191  T
Q  419 agccatatcacaatgaagaaaaat 442  Q
    |||| ||||||||||||| |||||    
T  10124190 agccgtatcacaatgaaggaaaat 10124167  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 442
Target Start/End: Complemental strand, 22350464 - 22350291
Alignment:
Q  269 ccaaattgccgcttgccaaatcaacaacaacccctttctaattttcttatgcaggtgacctccactccaacactcccaatgaataaacaaatttggcggc 368  Q
    |||||||||||||||||||||||    ||||||||| |  |||||||| ||||    ||| | ||| ||||||||||||||||||||||| ||||| |||    
T  22350464 ccaaattgccgcttgccaaatcattctcaaccccttccggattttcttgtgcataacaccactacttcaacactcccaatgaataaacaagtttgggggc 22350365  T
Q  369 acaagaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcacaatgaagaaaaat 442  Q
    | ||  ||||| ||||||| |||   |||||| ||   |||||||  | ||||||| |||||||||||||||||    
T  22350364 ataatgaaattcaagtctagccacgacataagcttcatccaaattcgcctagccatctcacaatgaagaaaaat 22350291  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 369
Target Start/End: Original strand, 43073861 - 43073961
Alignment:
Q  269 ccaaattgccgcttgccaaatcaacaacaacccctttctaattttcttatgcaggtgacctccactccaacactcccaatgaataaacaaatttggcggc 368  Q
    |||||||||||||||||||||||    ||| ||||| ||||||||||| | ||    ||| ||||||||||| ||||||||||||||||| ||||| |||    
T  43073861 ccaaattgccgcttgccaaatcatacgcaaacccttcctaattttcttgttcattacaccaccactccaacattcccaatgaataaacaagtttggtggc 43073960  T
Q  369 a 369  Q
    |    
T  43073961 a 43073961  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 52612945 - 52612984
Alignment:
Q  330 ccactccaacactcccaatgaataaacaaatttggcggca 369  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  52612945 ccactccaacactcccaatgaattaacaaatttggcggca 52612984  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 31524807 - 31524768
Alignment:
Q  330 ccactccaacactcccaatgaataaacaaatttggcggca 369  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  31524807 ccactccaacactcccaatggataaacaaatttggaggca 31524768  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 42773709 - 42773744
Alignment:
Q  161 atctccctaacacccacctccaagacaacactttaa 196  Q
    |||||||||||| |||||||||||||||||||||||    
T  42773709 atctccctaacaaccacctccaagacaacactttaa 42773744  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 43073684 - 43073811
Alignment:
Q  93 cagtcaacgcaacaagcagtcacggggactccattcccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaacact 192  Q
    |||||| | |||||| || || || |||||||||||||||||||| |||| ||| ||||  || || |  || || |||| ||||||||||||||||||     
T  43073684 cagtcatctcaacaaacaatcccgtggactccattcccactcgtagaacatacacgccgtaacatttagcctacccaacaaccacctccaagacaacacc 43073783  T
Q  193 ttaatctcatcaacaacctcgtcccacc 220  Q
    ||||| || ||| | ||||| |||||||    
T  43073784 ttaatatcttcatcgacctcatcccacc 43073811  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 55167344 - 55167395
Alignment:
Q  169 aacacccacctccaagacaacactttaatctcatcaacaacctcgtcccacc 220  Q
    |||| ||||||||||||||  |||||||||||||| |||||||| |||||||    
T  55167344 aacagccacctccaagacactactttaatctcatccacaacctcttcccacc 55167395  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 55167503 - 55167545
Alignment:
Q  327 cctccactccaacactcccaatgaataaacaaatttggcggca 369  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  55167503 cctccactccaacactcccaatggataaataaatttggaggca 55167545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 11821840 - 11821783
Alignment:
Q  235 ttgaaaatactatcatttctagctctccacgta-cccaaattgccgcttgccaaatca 291  Q
    |||||||||| ||| |||||| || ||||| || ||||||||||||||||||||||||    
T  11821840 ttgaaaatacgatcgtttctatctttccacataacccaaattgccgcttgccaaatca 11821783  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 238 - 441
Target Start/End: Original strand, 4863415 - 4863619
Alignment:
Q  238 aaaatactatcatttctagctctccacgt-acccaaattgccgcttgccaaatcaacaacaacccctttctaattttcttatgcaggtgacctccactcc 336  Q
    ||||||| |||||| ||  |||||||| | |||||||| ||||||||||||||||    ||||||||| | | ||||||| | ||    ||| |||||||    
T  4863415 aaaatacaatcattcctgactctccacatcacccaaatcgccgcttgccaaatcattctcaaccccttccgagttttcttgttcataataccgccactcc 4863514  T
Q  337 aacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcacaatgaag 436  Q
    ||||||| |||||||||||||||||||  ||||  | |||||| ||||| |||||   ||| |   |   |||||||||||||||||||||||||||||     
T  4863515 aacactctcaatgaataaacaaatttgaaggcattataaaattcaagtccaaccacctcattaacatcatccaaattttcatagccatatcacaatgaat 4863614  T
Q  437 aaaaa 441  Q
    |||||    
T  4863615 aaaaa 4863619  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 38548125 - 38548083
Alignment:
Q  327 cctccactccaacactcccaatgaataaacaaatttggcggca 369  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  38548125 cctccactccaacactcccaatggataaataaatttggaggca 38548083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 6316515 - 6316626
Alignment:
Q  109 cagtcacggggactccattcccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaacactttaatctcatcaacaa 208  Q
    ||||| |||||  |||| ||||| || |||||||||||||||||    |||| |||||| |||  |||||||||||||||||||||||| ||||| || |    
T  6316515 cagtcccgggggttccactcccattcataaaacaaacaagccggggtattaagtctccccaacgaccacctccaagacaacactttaatttcatccacca 6316614  T
Q  209 cctcgtcccacc 220  Q
    |||| |||||||    
T  6316615 cctcatcccacc 6316626  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 11239385 - 11239444
Alignment:
Q  129 ccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaa 188  Q
    |||||||||| |||  ||||||||||| |||||||| |||||||||||||||||||||||    
T  11239385 ccactcgtaatacatgcaagccggcacattaaatcttcctaacacccacctccaagacaa 11239444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 2291767 - 2291670
Alignment:
Q  121 ctccattcccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaacactttaatctcatcaacaacctcgtccca 218  Q
    |||||||||||||||||||||| |||||||||  | || || || || |||| ||||||||||||||| || |||||||| || || || ||||||||    
T  2291767 ctccattcccactcgtaaaacatacaagccggtcctttgaaccttcccaacagccacctccaagacaaaaccttaatctcgtccaccacttcgtccca 2291670  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 36517611 - 36517546
Alignment:
Q  129 ccactcgtaaaacaaacaagccggcaccttaaatctccctaacacccacctccaagacaacacttt 194  Q
    |||||| ||| ||| ||| ||||| || |||||||||||||||||||||||||||||||| |||||    
T  36517611 ccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaacttt 36517546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 442
Target Start/End: Complemental strand, 10430437 - 10430264
Alignment:
Q  269 ccaaattgccgcttgccaaatcaacaacaacccctttctaattttcttatgcaggtgacctccactccaacactcccaatgaataaacaaatttggcggc 368  Q
    |||||||||||||||||||||||    ||| || || ||||||||||| | || |   ||  |||||||||| ||||||||||||||||||||||| |||    
T  10430437 ccaaattgccgcttgccaaatcatacgcaaacctttcctaattttcttgttcatgactccggcactccaacattcccaatgaataaacaaatttgggggc 10430338  T
Q  369 acaagaaaatttaagtctaaccaatccataagtttttgccaaattttcatagccatatcacaatgaagaaaaat 442  Q
    |  | ||| || ||||| |||||  ||||||| ||   |||||   || |||||| ||| ||||||||||||||    
T  10430337 atgataaagttcaagtccaaccaccccataagcttcaaccaaacactcctagccaaatcgcaatgaagaaaaat 10430264  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 19110016 - 19110073
Alignment:
Q  235 ttgaaaatactatcatttctagctctccacgta-cccaaattgccgcttgccaaatca 291  Q
    |||||||||| ||| ||||||||| ||||| || ||||||||||||||||||||||||    
T  19110016 ttgaaaatacgatcgtttctagctttccacataacccaaattgccgcttgccaaatca 19110073  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 1160562 - 1160526
Alignment:
Q  333 ctccaacactcccaatgaataaacaaatttggcggca 369  Q
    |||||||| ||||||||||||||||||||||||||||    
T  1160562 ctccaacattcccaatgaataaacaaatttggcggca 1160526  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 14459430 - 14459371
Alignment:
Q  333 ctccaacactcccaatgaataaacaaatttggcggcacaagaaaatttaagtctaaccaa 392  Q
    |||||||| |||||||| ||||||||||| ||||||| || |||||| || |||||||||    
T  14459430 ctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaa 14459371  T

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