View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11985_high_20 (Length: 237)
Name: NF11985_high_20
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8141414 - 8141196
Alignment:
| Q |
1 |
ctgtgatcaagtgaaaaatgaaatgcttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagaga |
100 |
Q |
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| T |
8141414 |
ctgtgatcaagtgaaaaatgaaatgcttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagaga |
8141315 |
T |
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| Q |
101 |
cagttgcttgcatatcactgtagtagtccatgttattattttgtggtcctttgctttgtgcataatatgtggagtaataattcacaccaagaaaatcata |
200 |
Q |
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| T |
8141314 |
cagttgcttgcatatcactgtagtagtccatgtttttattttgtggtcctttgctttgtgcataatatgtggagtaataattcacaccaagaaaatcata |
8141215 |
T |
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| Q |
201 |
ggaatctttgataattaca |
219 |
Q |
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||||| ||| ||||||||| |
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| T |
8141214 |
ggaattttttataattaca |
8141196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 8165026 - 8164962
Alignment:
| Q |
152 |
tgctttgtgcataatatgtggagtaataattcacaccaagaaaatcataggaatctttgataatt |
216 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8165026 |
tgctttgtgcataatatgtggtgtaataattcacaccaagaaaatcataggaacctttgataatt |
8164962 |
T |
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