View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11985_high_9 (Length: 328)
Name: NF11985_high_9
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 49171536 - 49171615
Alignment:
| Q |
107 |
ggaagctaatggttcaattttgaccttttgagtttgttttaacatgaacttgaccttttgagcttattttaagtggcatg |
186 |
Q |
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| T |
49171536 |
ggaagctaatggttcaattttgaccttttgagtttgttttaacatgaaattgacctattgagcttattttaagtggcatg |
49171615 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 49171430 - 49171496
Alignment:
| Q |
1 |
cttcaattttaactcacttgtattactatgcatgaatgactaaaaataagtccaaagtagaatgatg |
67 |
Q |
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| T |
49171430 |
cttcaattttaactcacttgtattactatccatgaatgactaaaaataagtccaaagtagaatgatg |
49171496 |
T |
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