View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11985_low_11 (Length: 318)
Name: NF11985_low_11
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 52716208 - 52716501
Alignment:
| Q |
20 |
tcgcagcaattgtgccgctatatgttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccg |
119 |
Q |
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| T |
52716208 |
tcgcagcaattgtgccgctatatgttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccg |
52716307 |
T |
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| Q |
120 |
ttttgtcgctgttttcgcagttccattactatctttccattttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcactt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52716308 |
ttttgtcgctgttttcgcagttccattactatctttccattttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcactt |
52716407 |
T |
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| Q |
220 |
caaaaagtagttatccttggtgctctttttatatggaacacattctcaaaaaaccaagatagtcttgattggactattacacttttctcccttt |
313 |
Q |
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| T |
52716408 |
caaaaagtagttatccttggtgctctttttatatggaacacattctcaaaaaaccaagatagtcttgattggactattacacttttctcccttt |
52716501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 52710908 - 52711189
Alignment:
| Q |
28 |
attgtgccgctatatgttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcg |
127 |
Q |
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| T |
52710908 |
attgtgccactatatgtcgctatgatattagcatatggttcggtccgatggtggaaaatcttcacaccagatcaatgttctggaataaaccgttttgtct |
52711007 |
T |
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| Q |
128 |
ctgttttcgcagttccattactatctttccattttatatcttccaatgatccttatgctatgaattaccatttcttagcagctgattcacttcaaaaagt |
227 |
Q |
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| T |
52711008 |
cggtttttgcagttccgttactatcattccattttatttcatccaatgatccttatgctatgaattaccatttcttagcagccgattcacttcaaaaagt |
52711107 |
T |
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| Q |
228 |
agttatccttggtgctctttttatatggaacacattctcaaaaaaccaagatagtcttgattggactattacacttttctcc |
309 |
Q |
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| T |
52711108 |
agttatccttggtgctctttttatatggaacacattctcaaaaaaccaagatagtcttgattggaccattacacttttctcc |
52711189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 33101981 - 33102048
Alignment:
| Q |
76 |
tggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttcc |
143 |
Q |
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| T |
33101981 |
tggtggaaaatattctcaccggaccaatgttccggcataaaccgtttcgtcgcgattttcgcagttcc |
33102048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 10839139 - 10839040
Alignment:
| Q |
38 |
tatatgttgctatgatattagcatacggttcagttcgttggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgc |
137 |
Q |
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| T |
10839139 |
tatatgttgctatgatcttagcctacggttcggtccgttggtggaagattttctcaccggatcaatgttccggtataaaccgttttgtcgcggttttcgc |
10839040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 9970432 - 9970359
Alignment:
| Q |
82 |
aaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatcttt |
155 |
Q |
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| T |
9970432 |
aaaatgttcaccccagatcaatgttccggcataaaccgattcgtcgcagtttttgctgttccagttctatcttt |
9970359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 34970773 - 34970922
Alignment:
| Q |
76 |
tggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgtcgctgttttcgcagttccattactatctttccattttatatcttccaatg |
175 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||| || |||| ||||||||| | || || ||||| || || || |||| |
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| T |
34970773 |
tggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttccacttctctcattccacttcatctcaaccaaca |
34970872 |
T |
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| Q |
176 |
atccttatgctatgaattaccatttcttagcagctgattcacttcaaaaa |
225 |
Q |
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| T |
34970873 |
atccttacactatgaactacaggttcatagcagctgattcacttcaaaaa |
34970922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 16761431 - 16761382
Alignment:
| Q |
76 |
tggtggaaaatcttcacaccagatcaatgttctggtataaaccgttttgt |
125 |
Q |
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| T |
16761431 |
tggtggaaaatctttacaccagatcaatgtgctggtataaaccgttttgt |
16761382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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