View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11985_low_12 (Length: 316)
Name: NF11985_low_12
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 45272955 - 45273099
Alignment:
| Q |
169 |
tcttgtcctcatcgtcatgtttttcattagattcttcatatttattttcttgtaatgatgctgcaatctttacctcagctacattcctttcaatttcttt |
268 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45272955 |
tcttgtcctcatcatcatgtttttcattagattcttcatatttattttcttgtaatgatgctgcaatctttacctcagctacattcctttcaatttcttt |
45273054 |
T |
|
| Q |
269 |
acatttttctaggtcgtgatctttgcttcctctgtgctcctcctc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
45273055 |
acatttttctaggtcgtgatctttgcttcctttatgctcctcctc |
45273099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 45272818 - 45272941
Alignment:
| Q |
20 |
atttacacgcttgtcacgtaatgcttgctcttttctctccgtggcctcaatgtaatatattctaaaacttggcgatccaggacctataagtcttccaatt |
119 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45272818 |
atttacacgcgtatcacgtaatgcttgctcttttctctccgtggcctcaatgtaatatattctaaaacttggcgatccaggacctataagtcttccaatt |
45272917 |
T |
|
| Q |
120 |
tcattctcgtcttcctcttcgtct |
143 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45272918 |
tcattctcgtcttcctcttcgtct |
45272941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University