View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11985_low_19 (Length: 241)
Name: NF11985_low_19
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 6365131 - 6364931
Alignment:
| Q |
26 |
atgtagtaggtataaagaacatttgagctgtaaaaaacatcaaattttggaatagctataacgtgttactactatttaaaatcatcatcagtgaaattga |
125 |
Q |
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| T |
6365131 |
atgtagtaggtataaagaacatttgagctgtaaaaaacatcaaattttggaatagctataacgtgttactactatttaaaatcatcatcagtgaaattga |
6365032 |
T |
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| Q |
126 |
gagtccaatttttgtataggaaaaaccggtaaaggcaaagtcggagagaaaacgtatctgaaaagtgttattacctccttgccaacattgggagataaac |
225 |
Q |
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| T |
6365031 |
gagtccaatttttgtataggaaaaaccggaaaaggcaaagtgggagagaaaacgtatctggcaagtgttattacctccttgccaacattgggagataaac |
6364932 |
T |
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| Q |
226 |
a |
226 |
Q |
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| T |
6364931 |
a |
6364931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6365169 - 6365141
Alignment:
| Q |
1 |
atttgatataattaagggcaagtggatgt |
29 |
Q |
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| T |
6365169 |
atttgatataattaagggcaagtggatgt |
6365141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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