View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11985_low_27 (Length: 207)
Name: NF11985_low_27
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_low_27 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 7500416 - 7500609
Alignment:
| Q |
14 |
tcttaccgttggagtatatagtgaatttgttcataggttgaacttggatcttagtgaacaaaggctttggctctccatgtaaagatatatcaatggcatg |
113 |
Q |
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| T |
7500416 |
tcttaccgttggagtatatagtgaatttgttcataggttgaactcggatcttagtgaacaaaggctttggctctccatgtaaagatatatcaatggcatg |
7500515 |
T |
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| Q |
114 |
gatcaatttatttatgggacgatacagacagtgagattgattataatggtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccacca |
207 |
Q |
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| T |
7500516 |
gatcaatttatttatgggacgatacaaacagtgagattgattataatggtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccacca |
7500609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 8057466 - 8057420
Alignment:
| Q |
159 |
atggtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccac |
205 |
Q |
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| T |
8057466 |
atggtgaatggcagggaacgcgtcggagaagaaagaacgataaccac |
8057420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 27240977 - 27240929
Alignment:
| Q |
159 |
atggtgaatggaaggaaacgcgtcggagaagaaggaacggtaaccacca |
207 |
Q |
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| T |
27240977 |
atggtgcagggaagggaatgcgtcggagaaaaaggaacggtaaccacca |
27240929 |
T |
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