View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11985_low_3 (Length: 641)
Name: NF11985_low_3
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 247 - 451
Target Start/End: Complemental strand, 29461987 - 29461783
Alignment:
| Q |
247 |
tgaggatctcaaacaatgaatggaaacaaaacaattcataccaagattctttctttagctagtcacaggtcaactcttaaactgacacacagcacacatt |
346 |
Q |
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| T |
29461987 |
tgaggatctcaaacaatgaatggaaacaaaacaattcataccaagattctttctttagctagtcacaggtcaactcttaaactgacacacagcacacatt |
29461888 |
T |
|
| Q |
347 |
tatcaataataatctgccacttcttataacaacacacacatcgtatctatttcttctattggatctataaaacaaccttaggcacaaggaatggcagtca |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29461887 |
tatcaataataatctgccacttcttataacaacacacacatcgtatctatttcttctattggatctataaaacaaccttaggcacaaggaatggcagtca |
29461788 |
T |
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| Q |
447 |
aagtc |
451 |
Q |
| |
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||||| |
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| T |
29461787 |
aagtc |
29461783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 29462718 - 29462487
Alignment:
| Q |
15 |
aattttttcaacattttttacaccttaacaacatataggccatttttcaacactttgttacctcaaaacgacaaacatgccnnnnnnna-attgcgtata |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29462718 |
aattttttcaacattttttacaccttaacaacatataggccatttt-caacactttgttacctcaaaacgacaaacatgcctttttttttattgcgtata |
29462620 |
T |
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| Q |
114 |
acaagtgtcgcaggatcctcgcaattatagagcaagtgatacaccaaataaaagggaagaaaagaagacacgtacatctggtatccgatcttcaatttct |
213 |
Q |
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| T |
29462619 |
acaagtgttgcaggatcctcgcaattatagagcaagtgatacaccaaataaaaggaaagaaaagaagacacg----tctggtatccgatcttcaatttct |
29462524 |
T |
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| Q |
214 |
tttttcttcatcttcaatattctattctggctctgag |
250 |
Q |
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| T |
29462523 |
tttttcttcatcttcaatattctattctggctctgag |
29462487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 452 - 636
Target Start/End: Complemental strand, 29457149 - 29456965
Alignment:
| Q |
452 |
tacagcagaaaaggaataatagtccacattatgatattacaatataaaacataccttgtagaaaaaatatcataatttttagtctgagcacgtattcaag |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29457149 |
tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatatcataatttttagtctgagcacgtattcaag |
29457050 |
T |
|
| Q |
552 |
acatgatnnnnnnngggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagtacctttgcttct |
636 |
Q |
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| T |
29457049 |
acatgataaaaaaagggtgtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaatttatgcagtacctttgcttct |
29456965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 432 - 521
Target Start/End: Complemental strand, 29449223 - 29449134
Alignment:
| Q |
432 |
aaggaatggcagtcaaagtctacagcagaaaaggaataatagtccacattatgatattacaatataaaacataccttgtagaaaaaatat |
521 |
Q |
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|||| |||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||| || ||||||||||||||| |
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| T |
29449223 |
aagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat |
29449134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 617
Target Start/End: Complemental strand, 29449109 - 29449062
Alignment:
| Q |
570 |
gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt |
617 |
Q |
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|||||||||||||||| | ||||||||||||||||| |||||| |||| |
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| T |
29449109 |
gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt |
29449062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 29454546 - 29454488
Alignment:
| Q |
104 |
attgcgtataacaagtgtcgcaggatcctcgcaattatagagcaagtgatacaccaaat |
162 |
Q |
| |
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||||| |||| || ||| ||||||||||| ||||||| ||| ||||||||||||||||| |
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| T |
29454546 |
attgcttatagcaggtgccgcaggatcctagcaattacagaccaagtgatacaccaaat |
29454488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 9363367 - 9363454
Alignment:
| Q |
156 |
accaaataaaagggaagaaaagaagacacgtacatctggtatccgatcttcaatttcttttttcttcatcttcaatattctattctggctctgag |
250 |
Q |
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||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||||||||| | |||||||||||||||| |||| |
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| T |
9363367 |
accaaataaaaggaaagaaaagaagacatgtacatctggt-------cttcaatttcctttttcttcatctaccatattctattctggctttgag |
9363454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 9363234 - 9363293
Alignment:
| Q |
15 |
aattttttcaacattttttacaccttaacaacatataggccatttttcaacactttgtta |
74 |
Q |
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|||| |||||||| |||||||| |||||| ||||||| ||||||| |||||||||||||| |
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| T |
9363234 |
aattgtttcaacactttttacaacttaacgacatataagccatttctcaacactttgtta |
9363293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 9295337 - 9295291
Alignment:
| Q |
257 |
aaacaatgaatggaaacaaaacaattcataccaagattctttcttta |
303 |
Q |
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|||||||||||||||| ||| ||||||||||||| |||||||||||| |
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| T |
9295337 |
aaacaatgaatggaaaaaaagcaattcataccaaaattctttcttta |
9295291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 9061854 - 9061803
Alignment:
| Q |
252 |
atctcaaacaatgaatggaaacaaaa-caattcataccaagattctttcttta |
303 |
Q |
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|
||||||||||||||||| |||||||| ||||||||||||| |||| ||||||| |
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| T |
9061854 |
atctcaaacaatgaatg-aaacaaaagcaattcataccaaaattcgttcttta |
9061803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 9068723 - 9068672
Alignment:
| Q |
251 |
gatctcaaacaatgaatggaaacaaaacaattcataccaagattctttcttta |
303 |
Q |
| |
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||||||||| |||||||| ||| ||| ||||||||||||| |||||||||||| |
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| T |
9068723 |
gatctcaaagaatgaatgaaaa-aaagcaattcataccaaaattctttcttta |
9068672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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