View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11985_low_6 (Length: 436)
Name: NF11985_low_6
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11985_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 34 - 416
Target Start/End: Complemental strand, 45665805 - 45665440
Alignment:
| Q |
34 |
tcttttttaatggtatatgttagtatgttaattgaaatgttacttattttgttgtcacgaccagagttatagatctccaactctttctttaacttttaac |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
45665805 |
tcttttttaatggtatatgttagtatgttaattgaaatgttacttattttgttgtgacgaccagagtcatagatctccaactctttctttaatttttagc |
45665706 |
T |
|
| Q |
134 |
ttaaatcagttgagtcacctaaccctagataaatttacacctacacattggtgatttctatcaaagtcaaacctatattttgtagtttcgttgaaacgtg |
233 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45665705 |
ttaaatcagttgagt---------------aaatttacacctgcacattggtgatttcaatcaaagtcaaacctatattttgtagtttcgttgaaacgtg |
45665621 |
T |
|
| Q |
234 |
atcggggtggtgtgtatttcttgcatttcttgtttgttttttccgtaaagaaacaaatagagaaaagacgtgatatgtcaagagtgagtgatagnnnnnn |
333 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45665620 |
atcggggtggtgtgtatttcttgaatttcttgtattttttttccgtaaagaaacaaatagagaaaagacgtgatatgtcaaga----gtgatagaaaaaa |
45665525 |
T |
|
| Q |
334 |
nngatgttgaatggatgataggaagtcaggag--tgttcacaaattaacatatacatgggattgaggtcaaccatcctttctgtg |
416 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45665524 |
aagatgttgaatggaagataggaagtcaggagtatgttcacaaattaacatatacatgggattgaggtcaaccatcctttctgtg |
45665440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42557610 - 42557571
Alignment:
| Q |
1 |
ccattcttcaaaggtaatctagaagaaaaaacctcttttt |
40 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
42557610 |
ccattcttcaaaggtaatctagaaaaaaaaaccttttttt |
42557571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43183940 - 43183910
Alignment:
| Q |
1 |
ccattcttcaaaggtaatctagaagaaaaaa |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43183940 |
ccattcttcaaaggtaatctagaagaaaaaa |
43183910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 47772307 - 47772340
Alignment:
| Q |
1 |
ccattcttcaaaggtaatctagaagaaaaaacct |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
47772307 |
ccattcttcaaaggtaatctagaaaaaaaaacct |
47772340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University