View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11986_low_2 (Length: 355)
Name: NF11986_low_2
Description: NF11986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11986_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 11492352 - 11492134
Alignment:
| Q |
18 |
taatccccataaattttcagaaatttcaaaacataaagatttgcatgtgtttaaatctctcaaggttggatttataaaagtttttctattgacttggact |
117 |
Q |
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| T |
11492352 |
taatccccataaattttcagaaatttcaaaacataaagatttgcgtgtgtttaaatctctcaaggttggatttataaaagtttttctattgacttggact |
11492253 |
T |
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| Q |
118 |
atgattatcttatttacagtacatatatgacatttgaatctagtgtcctcaaatagtagctatattagtttgaaatttgtgcagttttgaaaaatggttt |
217 |
Q |
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| T |
11492252 |
atgattatcttatttacagtacatatatgacatttgaagctagtgtcgtcaaatagtagctatattagtttgaaatttgtgcacttttgaaaaatggttt |
11492153 |
T |
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| Q |
218 |
agatattatcttgattatt |
236 |
Q |
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| T |
11492152 |
agatattatcttgattatt |
11492134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 11492112 - 11491988
Alignment:
| Q |
235 |
ttctcgagttggtttagattcaatttattttatgaattgtttataggtgaattaggggtca-----------------tgtttcatcaccttctgcatag |
317 |
Q |
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| T |
11492112 |
ttcttgagttggtttagattcaatttattttatgaattgtttataggtgaattagggttcataaggatggttcacaattgtttcattaccttctgcatag |
11492013 |
T |
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| Q |
318 |
ttctaaatatgtaagttcttcatct |
342 |
Q |
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| T |
11492012 |
ttctaaatatgtaagttcttcatct |
11491988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 10264656 - 10264530
Alignment:
| Q |
104 |
tattgacttggactatgattatcttatttacagtacatatatgacatttgaatctagtgtcctcaaatagtagctatattagtttgaaatttgtgcagtt |
203 |
Q |
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| T |
10264656 |
tattgacttggactatgattatcttatttacattacata-atgacatttgaagctagtgtcatcaaatagtagctttattagtttgaaatttgtgcactt |
10264558 |
T |
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| Q |
204 |
ttg-aaaaatggtttagatattatcttg |
230 |
Q |
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| T |
10264557 |
atgaaaaaatggtttagatattttcttg |
10264530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 10264454 - 10264401
Alignment:
| Q |
243 |
ttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
296 |
Q |
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| T |
10264454 |
ttggtttagattcaatttattttctgaattgtttataggtgaattagggatcat |
10264401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 13180294 - 13180347
Alignment:
| Q |
243 |
ttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
296 |
Q |
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| T |
13180294 |
ttggtttagattgaatttattttatgaattgtttgtaggtgaattggggatcat |
13180347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 444603 - 444665
Alignment:
| Q |
234 |
attctcgagttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
296 |
Q |
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| T |
444603 |
attctggaattggtttcgattgaagttattttatgaattgtttgtaggtgaattggggatcat |
444665 |
T |
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