View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11986_low_4 (Length: 320)
Name: NF11986_low_4
Description: NF11986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11986_low_4 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 3543575 - 3543871
Alignment:
| Q |
21 |
aagtaatgttgttgattcagatgggtgatgaaaagttggagctggttttggtacttgaggaacaaagttcttgagaagtgtctagtcttgttttaatcta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3543575 |
aagtaatgttgttgattcagatgggtgatgaaaagttggagctggttttggtacttgaggaacaaagttcttgagaagtgtctagtcttgttttaatcta |
3543674 |
T |
|
| Q |
121 |
aaatttgataacaatcaatgacattgaacatattttatgcacgcatgcagtcatatttttgtatctaaccacacttgtagaaacatctactaaggtaaaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
3543675 |
aaatttgataacaatcaatgacattgagcatattttatgcacgcatgcaatcatatttttgtatctaccctcacttgtagaaacatctactaaggtaaaa |
3543774 |
T |
|
| Q |
221 |
tatatggtgtcaatatgattacattctgtttaattaannnnnnnnacattgttagtgcaatttgtgaagaatcatgggatgagagggtcgaaggttatac |
320 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3543775 |
tatatggtgtcaatttgatt---ttctgtttaattaattttttttacattgttagtgcaatttgtgaagaatcatgggatgagagggtcgaaggttatac |
3543871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 3530364 - 3530437
Alignment:
| Q |
21 |
aagtaatgttgttgattcagatgggtgatgaaaagttggagctggttttggtacttgaggaacaaagttcttga |
94 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||| ||||||||| |
|
|
| T |
3530364 |
aagtaatgttgttgattcagaggggtgatgaaaagttggagctgcctgtggtacttgaagaacagagttcttga |
3530437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University