View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11986_low_6 (Length: 238)
Name: NF11986_low_6
Description: NF11986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11986_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 41811798 - 41811599
Alignment:
| Q |
25 |
tcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtttgacctgacagtcattataccaactatcaacgtgtttatattctt |
124 |
Q |
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| T |
41811798 |
tcttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtttgacctgacagtcactataccaactatcaacgtgtttatattctt |
41811699 |
T |
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| Q |
125 |
catcccgttcttccaatattctcaaaagatctaggtatttgttggctaattcattcttttcattgtcaacctttgtgagggcctgtgcatgttcttctct |
224 |
Q |
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| T |
41811698 |
catcccgttcttccaatattctcaaaagatctaggtatttgttggctaattcattattttcattgtcaacctttgtgagggcctgtgcatgttcttctct |
41811599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 41798401 - 41798328
Alignment:
| Q |
131 |
gttcttccaatattctcaaaagatctaggtatttgttggctaattcattcttttcattgtcaacctttgtgagg |
204 |
Q |
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| T |
41798401 |
gttcttccaatgttctctgaagatccatgtttttgtaggctaattcattcttttcattgtcaaccattctgagg |
41798328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 41804763 - 41804705
Alignment:
| Q |
162 |
tttgttggctaattcattcttttcattgtcaacctttgtgagggcctgtgcatgttctt |
220 |
Q |
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| T |
41804763 |
tttgttggctaattcattcttttcattgtcaaccactgcgagggtttttgcatgttctt |
41804705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 41798527 - 41798426
Alignment:
| Q |
26 |
cttcaagaaacatttctgccatttttctcatcttccactccgcacgtttaagtttgacctgacagtcattataccaactatcaacgtgtttatattcttc |
125 |
Q |
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||||| ||||| ||||||||||| | ||| |||| ||| ||| || ||||||||||| || |||||| |||||||||||| |||||||||||||| |
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| T |
41798527 |
cttcacgaaactcttctgccatttcttccattttcctctctgcaacttcaagtttgaccttccattcattaaaccaactatcaatttgtttatattcttc |
41798428 |
T |
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| Q |
126 |
at |
127 |
Q |
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|| |
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| T |
41798427 |
at |
41798426 |
T |
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