View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11987_high_10 (Length: 242)

Name: NF11987_high_10
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11987_high_10
NF11987_high_10
[»] chr6 (5 HSPs)
chr6 (1-224)||(1197239-1197467)
chr6 (63-221)||(1187076-1187231)
chr6 (63-220)||(1181854-1182008)
chr6 (63-220)||(1192778-1192936)
chr6 (64-220)||(896656-896815)
[»] chr4 (2 HSPs)
chr4 (63-220)||(10203253-10203410)
chr4 (55-219)||(49611764-49611928)
[»] chr7 (3 HSPs)
chr7 (156-221)||(8306727-8306792)
chr7 (157-220)||(5178789-5178852)
chr7 (62-219)||(8551803-8551957)
[»] chr8 (8 HSPs)
chr8 (157-220)||(5195091-5195154)
chr8 (157-220)||(5198932-5198995)
chr8 (157-220)||(6231607-6231670)
chr8 (157-218)||(5171557-5171618)
chr8 (157-220)||(1795849-1795912)
chr8 (157-220)||(5177655-5177718)
chr8 (157-220)||(5185097-5185160)
chr8 (186-224)||(5207118-5207156)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1197239 - 1197467
Alignment:
Q  1 ttatgcttagaatgtttatacttttattaatatgaatgnnnnnnnnagaggttttcaatataaatgttatgtgt-----agcttttgacttctaactcta 95  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  1197239 ttatgcttagaatgtttatacttttattaatatgaatgttttttttagaggttttcaatataaatgttatgtgtagtgtagcttttgacttctaactcta 1197338  T
Q  96 ttttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgcttttgcagttctgatgatgcaaagtgttggtgg 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||||||||||||||    
T  1197339 ttttgttaatcgtcgataactacagtttttctatgagacgttaatgagaaaaaaaaagaacgactgcttttgcagttctgatgatacaaagtgttggtgg 1197438  T
Q  196 catgacttgaaggatgtgaaagtcacgag 224  Q
    |||||||||||||||||||||||||||||    
T  1197439 catgacttgaaggatgtgaaagtcacgag 1197467  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 1187076 - 1187231
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 162  Q
    |||||| |||||||||| |||||||||||||||||||||| ||| || | |||| || ||||||||||||||| |||||||       |   |||| |||    
T  1187076 aatgttttgtgtagcttatgacttctaactctattttgtttatcatctaaaactacaatttttctatgagacgctaatgagaaaaaaag---gcgattgc 1187172  T
Q  163 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcac 221  Q
    ||||||| ||||  | || | |||||||||||||||| |||||||||||||||||||||    
T  1187173 ttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaagtcac 1187231  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 1181854 - 1182008
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 162  Q
    |||||||| ||| |||| ||| |||| ||||||||||||| ||| || | |||||||| |||||||||||||| |||||||       ||   ||| |||    
T  1181854 aatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctatgagacgctaatgagaaaaaaaga---cgattgc 1181950  T
Q  163 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||| ||||| |||    |||||||||||||||||||||||||||||||||||||    
T  1181951 ttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtca 1182008  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 1192778 - 1192936
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctatttt-gttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 161  Q
    |||||||||||| |||| ||| ||||||||||||||| ||| ||| || | |||| |||||||| ||||||||| ||||| |       |||| | | ||    
T  1192778 aatgttatgtgtggcttgtgagttctaactctatttttgtttatcatctaaaactacagtttttgtatgagacgctaatgggaaaaaaagagaacaattg 1192877  T
Q  162 cttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| ||||| |||  | |||||||||||||||| ||||||||||||||||||||    
T  1192878 cttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtca 1192936  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 896656 - 896815
Alignment:
Q  64 atgttatgtgtagcttttgacttcta--actctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 161  Q
    |||||||||||||||| ||| || ||  ||||||||||||| ||| || | |||| |||||||||||||||||| ||||| |        ||| ||| ||    
T  896656 atgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggaaaaaa--agaacgattg 896753  T
Q  162 cttttgcag---ttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||||   ||||| |||  | |||||||||||||||| ||||||||||||||||||||    
T  896754 cttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtca 896815  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 10203253 - 10203410
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 162  Q
    |||||| | ||| |||| ||| |||||||||||||||||| ||| || | |||| |||||||| ||||||||| ||||| |       |||| ||| |||    
T  10203253 aatgttttctgtggcttgtgagttctaactctattttgtttatcatctaaaactacagtttttttatgagacgctaatgggaaaaaaagagaacgattgc 10203352  T
Q  163 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||| ||||  |||  | |||||||||||||||| ||||||||||||||||||||    
T  10203353 ttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtca 10203410  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 49611764 - 49611928
Alignment:
Q  55 tcaatataaatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngaga 154  Q
    ||||||||||| || |||| ||||| ||| || ||||| |||||||||||| ||| | |||| ||||||||||| |||||  |||||||       ||      
T  49611764 tcaatataaattttttgtggagcttctgagttataactatattttgttaattgtccaaaactacagtttttctacgagacactaatgagaagaaaagacg 49611863  T
Q  155 gcgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtc 219  Q
     ||| ||| ||||| |||||  |||| | |||||||||||||||| |||||||||| ||||||||    
T  49611864 acgattgcgtttgcggttctagtgataccaagtgttggtggcatggcttgaaggatttgaaagtc 49611928  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 8306727 - 8306792
Alignment:
Q  156 cgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcac 221  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||| ||||||||||    
T  8306727 cgactgcttttgcagctctaatgatacaaagtgttggtggcatggcttgaaggatttgaaagtcac 8306792  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5178789 - 5178852
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5178789 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5178852  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 8551957 - 8551803
Alignment:
Q  62 aaatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 161  Q
    |||||||||||| ||||| ||| || |||| ||||||| ||||| ||| | |||| |||||||||||||||||  | |||||       ||   ||||||    
T  8551957 aaatgttatgtggagcttctgagttataacgctattttattaattgtccaaaactacagtttttctatgagactctgatgagaagaaaaga---cgactg 8551861  T
Q  162 cttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtc 219  Q
    ||||||||| |||  |||| | || ||||||||||||| ||||||| || ||||||||    
T  8551860 cttttgcagctctagtgataccaattgttggtggcatggcttgaagaatttgaaagtc 8551803  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5195091 - 5195154
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5195091 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5195154  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 5198995 - 5198932
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5198995 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5198932  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 6231607 - 6231670
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  6231607 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 6231670  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 5171557 - 5171618
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagt 218  Q
    ||||||||||||| ||||  |||| | |||||||||||||||| ||||||||||||||||||    
T  5171557 gactgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagt 5171618  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 1795912 - 1795849
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  1795912 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 1795849  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5177655 - 5177718
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5177655 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5177718  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5185097 - 5185160
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5185097 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5185160  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 5207118 - 5207156
Alignment:
Q  186 gtgttggtggcatgacttgaaggatgtgaaagtcacgag 224  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5207118 gtgttggtggcatggcttgaaggatgtaaaagtcacgag 5207156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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