View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11987_low_1 (Length: 796)
Name: NF11987_low_1
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11987_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 760; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 1 - 780
Target Start/End: Complemental strand, 41811621 - 41810842
Alignment:
| Q |
1 |
agggcctgtgcatgttcttctctgattttttcgatgtggtgctccaactcttcttttgctttctgcaaggaaagcaggtccttttgcaggttatcaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811621 |
agggcctgtgcatgttcttctctgattttttcgatgtggtgctccaactcttcttttgctttctgcaaggaaagcaggtccttttgcaggttatcaactt |
41811522 |
T |
|
| Q |
101 |
gggctgtgaaggcaactatttttcctgacaactcttcctctgcctcggaaagtttatcctgaagtgcagagaactcaaattctcttgttgctaatctttt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811521 |
gggctgtgaaggcaactatttttcctgacgactcttcctctgcctcggaaagtttatcctgaagtgcagagaactcaaattctcttgttgctaatctttt |
41811422 |
T |
|
| Q |
201 |
ctctgaatgatctattttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811421 |
ctctgaatgatctattttgtctgccagctccaacttctcctgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttact |
41811322 |
T |
|
| Q |
301 |
ttttgctttaaagtgttcaactcacagtctttggctcttaactgttcttcaactacactcttctggttgtctatgtaatccatctccaatttcagctttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811321 |
ttttgctttaaagtgttcaactcacagtctttggctcttaactgttcttcaactacactcttctggttgtctatgtaatccatctccaatttcagctttt |
41811222 |
T |
|
| Q |
401 |
cgatcgactgacctaatttttgcatctcattatacatggaaagctgatcatctttatgaatcttaatttgctccttgcaggtagatattacaaccaaaca |
500 |
Q |
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| T |
41811221 |
cgatcgactgacctaatttttgcatctcattatacatggaaagctgatcatctttatgaatcttaatttgctccttgcaggtagatattacaaccaaaca |
41811122 |
T |
|
| Q |
501 |
ttcttcctctgccttattaagcttatcttggaaaactaataactccgattctctctcatctgatattttctctaattttgctattctgtcgtgtagctcc |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811121 |
ttcttcctctgccttattaagcttatcttggaaaactaataactccgattctctctcatctgatattttctctaattttgctattctgtcgtgtagctcc |
41811022 |
T |
|
| Q |
601 |
aacttctgctgtgtcagatgactaatcacttggatgttagcctttatttgctcttcatcttcgctacttttgctctttatagtgcccatctccaattcca |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811021 |
aacttctgctgtgtcagatgactaatcacttggatgttggcctttatttgctcttcatcttcgctacttttgctctttatagtgcccatctccaattcca |
41810922 |
T |
|
| Q |
701 |
gactccttatacgcatcgttaaattttctttatcttccataagtctctcttgctccagggtttttctcccaacctcctct |
780 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41810921 |
gactccttatatgcatcgttaaattttctttatcttccgtaagtctctcttgctccagggtttttctctcaacctcctct |
41810842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 41 - 389
Target Start/End: Complemental strand, 41798290 - 41797942
Alignment:
| Q |
41 |
gctccaactcttcttttgctttctgcaaggaaagcaggtccttttgcaggttatcaacttgggctgtgaaggcaactatttttcctgacaactcttcctc |
140 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||| |||||||||||| || |||||||| ||||||||||||| | |||||||||| ||||||||| |
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| T |
41798290 |
gctccaattcttcttttgttttctgcaaggaaagcaagtccttttgcagattgtcaacttgagctgtgaaggcaattgtttttcctgaagcctcttcctc |
41798191 |
T |
|
| Q |
141 |
tgcctcggaaagtttatcctgaagtgcagagaactcaaattctcttgttgctaatcttttctctgaatgatctattttgtctgccagctccaacttctcc |
240 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| || ||| |
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| T |
41798190 |
tgccttataaagtttatcctgaagtgtagagaactcaaattctcttgttgctaatcttctctccgaatgatctattttgtctgctagctccaaattttcc |
41798091 |
T |
|
| Q |
241 |
tgtgccagtttagcgatgtgatcacagtaagcaattatttgcttttcgttctcacttactttttgctttaaagtgttcaactcacagtctttggctctta |
340 |
Q |
| |
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|||||||||||| ||| | ||| | || |||| | ||||||||| ||| |||||| ||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
41798090 |
tgtgccagtttactgatctcatcccggttagcactgatttgctttgcgtattcactttctttttgctctaaagtgtttaactcacggtctttggctctta |
41797991 |
T |
|
| Q |
341 |
actgttcttcaactacactcttctggttgtctatgtaatccatctccaa |
389 |
Q |
| |
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| |||||||||||| ||||||||||| || |||| |||||| |||||| |
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| T |
41797990 |
attgttcttcaacttcactcttctggctgcgtatggaatccagctccaa |
41797942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 616 - 767
Target Start/End: Complemental strand, 41797817 - 41797666
Alignment:
| Q |
616 |
agatgactaatcacttggatgttagcctttatttgctcttcatcttcgctacttttgctctttatagtgcccatctccaattccagactccttatacgca |
715 |
Q |
| |
|
|||||||| |||||||||| ||| | | ||||||||||||| |||| |||| |||||||||| || || | |||||||| ||||||| || |||| || |
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| T |
41797817 |
agatgactgatcacttggacgttggtccttatttgctcttcgtctttgctatttttgctcttaatggtactcatctccagttccagattctttatctgcc |
41797718 |
T |
|
| Q |
716 |
tcgttaaattttctttatcttccataagtctctcttgctccagggtttttct |
767 |
Q |
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| |||||||||||| | |||||||||||||||||||| ||||||| |||||| |
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| T |
41797717 |
tggttaaattttctctgtcttccataagtctctcttgttccagggattttct |
41797666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 780
Target Start/End: Complemental strand, 41797319 - 41797260
Alignment:
| Q |
721 |
aaattttctttatcttccataagtctctcttgctccagggtttttctcccaacctcctct |
780 |
Q |
| |
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||||||||| | |||||| ||||||||||||| ||||||| |||||| ||||||||||| |
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| T |
41797319 |
aaattttctctgtcttccgtaagtctctcttgttccagggattttctgtcaacctcctct |
41797260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 41804654 - 41804568
Alignment:
| Q |
166 |
gcagagaactcaaattctcttgttgctaatcttttctctgaatgatctattttgtctgccagctccaacttctcctgtgccagttta |
252 |
Q |
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| T |
41804654 |
gcagagaactcagatttttttgttgctaatattctctccaaatgatctaatttctctcccatcaacaaattctcctgtgccagttta |
41804568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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