View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11987_low_11 (Length: 242)

Name: NF11987_low_11
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11987_low_11
NF11987_low_11
[»] chr6 (5 HSPs)
chr6 (1-224)||(1197239-1197467)
chr6 (63-221)||(1187076-1187231)
chr6 (63-220)||(1181854-1182008)
chr6 (63-220)||(1192778-1192936)
chr6 (64-220)||(896656-896815)
[»] chr4 (2 HSPs)
chr4 (63-220)||(10203253-10203410)
chr4 (55-219)||(49611764-49611928)
[»] chr7 (3 HSPs)
chr7 (156-221)||(8306727-8306792)
chr7 (157-220)||(5178789-5178852)
chr7 (62-219)||(8551803-8551957)
[»] chr8 (8 HSPs)
chr8 (157-220)||(5195091-5195154)
chr8 (157-220)||(5198932-5198995)
chr8 (157-220)||(6231607-6231670)
chr8 (157-218)||(5171557-5171618)
chr8 (157-220)||(1795849-1795912)
chr8 (157-220)||(5177655-5177718)
chr8 (157-220)||(5185097-5185160)
chr8 (186-224)||(5207118-5207156)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1197239 - 1197467
Alignment:
Q  1 ttatgcttagaatgtttatacttttattaatatgaatgnnnnnnnnagaggttttcaatataaatgttatgtgt-----agcttttgacttctaactcta 95  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  1197239 ttatgcttagaatgtttatacttttattaatatgaatgttttttttagaggttttcaatataaatgttatgtgtagtgtagcttttgacttctaactcta 1197338  T
Q  96 ttttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgcttttgcagttctgatgatgcaaagtgttggtgg 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||||||||||||||    
T  1197339 ttttgttaatcgtcgataactacagtttttctatgagacgttaatgagaaaaaaaaagaacgactgcttttgcagttctgatgatacaaagtgttggtgg 1197438  T
Q  196 catgacttgaaggatgtgaaagtcacgag 224  Q
    |||||||||||||||||||||||||||||    
T  1197439 catgacttgaaggatgtgaaagtcacgag 1197467  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 1187076 - 1187231
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 162  Q
    |||||| |||||||||| |||||||||||||||||||||| ||| || | |||| || ||||||||||||||| |||||||       |   |||| |||    
T  1187076 aatgttttgtgtagcttatgacttctaactctattttgtttatcatctaaaactacaatttttctatgagacgctaatgagaaaaaaag---gcgattgc 1187172  T
Q  163 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcac 221  Q
    ||||||| ||||  | || | |||||||||||||||| |||||||||||||||||||||    
T  1187173 ttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaagtcac 1187231  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 1181854 - 1182008
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 162  Q
    |||||||| ||| |||| ||| |||| ||||||||||||| ||| || | |||||||| |||||||||||||| |||||||       ||   ||| |||    
T  1181854 aatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctatgagacgctaatgagaaaaaaaga---cgattgc 1181950  T
Q  163 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||| ||||| |||    |||||||||||||||||||||||||||||||||||||    
T  1181951 ttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtca 1182008  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 1192778 - 1192936
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctatttt-gttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 161  Q
    |||||||||||| |||| ||| ||||||||||||||| ||| ||| || | |||| |||||||| ||||||||| ||||| |       |||| | | ||    
T  1192778 aatgttatgtgtggcttgtgagttctaactctatttttgtttatcatctaaaactacagtttttgtatgagacgctaatgggaaaaaaagagaacaattg 1192877  T
Q  162 cttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| ||||| |||  | |||||||||||||||| ||||||||||||||||||||    
T  1192878 cttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtca 1192936  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 896656 - 896815
Alignment:
Q  64 atgttatgtgtagcttttgacttcta--actctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 161  Q
    |||||||||||||||| ||| || ||  ||||||||||||| ||| || | |||| |||||||||||||||||| ||||| |        ||| ||| ||    
T  896656 atgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttctatgagacgctaatgggaaaaaa--agaacgattg 896753  T
Q  162 cttttgcag---ttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||||   ||||| |||  | |||||||||||||||| ||||||||||||||||||||    
T  896754 cttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtca 896815  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 10203253 - 10203410
Alignment:
Q  63 aatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactgc 162  Q
    |||||| | ||| |||| ||| |||||||||||||||||| ||| || | |||| |||||||| ||||||||| ||||| |       |||| ||| |||    
T  10203253 aatgttttctgtggcttgtgagttctaactctattttgtttatcatctaaaactacagtttttttatgagacgctaatgggaaaaaaagagaacgattgc 10203352  T
Q  163 ttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||| ||||  |||  | |||||||||||||||| ||||||||||||||||||||    
T  10203353 ttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtca 10203410  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 49611764 - 49611928
Alignment:
Q  55 tcaatataaatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngaga 154  Q
    ||||||||||| || |||| ||||| ||| || ||||| |||||||||||| ||| | |||| ||||||||||| |||||  |||||||       ||      
T  49611764 tcaatataaattttttgtggagcttctgagttataactatattttgttaattgtccaaaactacagtttttctacgagacactaatgagaagaaaagacg 49611863  T
Q  155 gcgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtc 219  Q
     ||| ||| ||||| |||||  |||| | |||||||||||||||| |||||||||| ||||||||    
T  49611864 acgattgcgtttgcggttctagtgataccaagtgttggtggcatggcttgaaggatttgaaagtc 49611928  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 8306727 - 8306792
Alignment:
Q  156 cgactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtcac 221  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||| ||||||||||    
T  8306727 cgactgcttttgcagctctaatgatacaaagtgttggtggcatggcttgaaggatttgaaagtcac 8306792  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5178789 - 5178852
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5178789 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5178852  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 8551957 - 8551803
Alignment:
Q  62 aaatgttatgtgtagcttttgacttctaactctattttgttaatcgtcgataactgcagtttttctatgagacgttaatgagnnnnnnngagagcgactg 161  Q
    |||||||||||| ||||| ||| || |||| ||||||| ||||| ||| | |||| |||||||||||||||||  | |||||       ||   ||||||    
T  8551957 aaatgttatgtggagcttctgagttataacgctattttattaattgtccaaaactacagtttttctatgagactctgatgagaagaaaaga---cgactg 8551861  T
Q  162 cttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtc 219  Q
    ||||||||| |||  |||| | || ||||||||||||| ||||||| || ||||||||    
T  8551860 cttttgcagctctagtgataccaattgttggtggcatggcttgaagaatttgaaagtc 8551803  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5195091 - 5195154
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5195091 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5195154  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 5198995 - 5198932
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5198995 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5198932  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 6231607 - 6231670
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    ||||||||||||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  6231607 gactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 6231670  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 5171557 - 5171618
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagt 218  Q
    ||||||||||||| ||||  |||| | |||||||||||||||| ||||||||||||||||||    
T  5171557 gactgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagt 5171618  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 1795912 - 1795849
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  1795912 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 1795849  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5177655 - 5177718
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5177655 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5177718  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 5185097 - 5185160
Alignment:
Q  157 gactgcttttgcagttctgatgatgcaaagtgttggtggcatgacttgaaggatgtgaaagtca 220  Q
    |||||||| |||||||||  |||| | |||||||||||||||| ||||||| ||||||||||||    
T  5185097 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtca 5185160  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 5207118 - 5207156
Alignment:
Q  186 gtgttggtggcatgacttgaaggatgtgaaagtcacgag 224  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5207118 gtgttggtggcatggcttgaaggatgtaaaagtcacgag 5207156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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