View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11987_low_2 (Length: 778)
Name: NF11987_low_2
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11987_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 5 - 638
Target Start/End: Original strand, 6512472 - 6513104
Alignment:
| Q |
5 |
tttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccaccgtcattgccatcaaca |
104 |
Q |
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| T |
6512472 |
tttttctaaaaaagtaactaaccttaattcttcatgcaaatgattactaatgaattaggagctgccaccgccgccaaaaccaccgtcattgccatcaaca |
6512571 |
T |
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| Q |
105 |
ccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactctaattgcattctcattcatgttcgtactaaacccctcaa |
204 |
Q |
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| T |
6512572 |
ccggtcggaatagccagtgcgcggtgaaatgggcggtggaccaccttctaaagaagaactccaattgcattctcattcatgttcgtaccaaacctctcaa |
6512671 |
T |
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| Q |
205 |
ttccagtaggtattcttctccttatctcccattcatccttcccacatcaacnnnnnnnnnnnntgaacctttcatcataaattttaacaaaaccctgttt |
304 |
Q |
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| T |
6512672 |
ttccagtaggtattcttctccttatctcccattcatccttctcacatcaacaaaaaaaataaatcaacctttcatcataaattttaacaaaaccctgttt |
6512771 |
T |
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| Q |
305 |
ttgtcctttcacctagattatcatattttaacctatgatatgatgtatggctataatttgaatttaaataaaactatttatgaatatagaattgataatg |
404 |
Q |
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| T |
6512772 |
ttgtcctttcacctagattatcatattttaacctatgatatgatgtatggctataatttgaatttaaataaaactatttatgaatatagaattgataatg |
6512871 |
T |
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| Q |
405 |
tgtatgggatcatgcaaccaa-ttatttgcattatgaaattttgaatttggtttaatgcaggtgatcatattgtcgatgttcctaaacatggtcgtccac |
503 |
Q |
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| T |
6512872 |
tgtatgggatcatgcaaccaaattatttgtattatgaaattttgaatttggtttaatgcaggtgatcatattgtcgatgttcctaaacatggtcgtccac |
6512971 |
T |
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| Q |
504 |
caactcatgaagaattgcaccaattttttcttcccttccgtggattttgtgctagaaaaggggtaagaattaataaatttccaaagtttgagtaatctct |
603 |
Q |
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| T |
6512972 |
caactcatgaagaattgcaccaattttttcttcccttccgtggattttgtgctagaaaaggggtaagaattaataaatttccaaagtttgagtaatctc- |
6513070 |
T |
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| Q |
604 |
ttattaaattcctacatttacatctgaattagaaa |
638 |
Q |
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| T |
6513071 |
-tattaaattcctacatttacatctgaattagaaa |
6513104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 675 - 762
Target Start/End: Original strand, 6513623 - 6513710
Alignment:
| Q |
675 |
caagttgataattatgaatgttgatcattttagattgaggcaaaggaattggtcttgcatgacattgatgttcctagtgctcttactg |
762 |
Q |
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| T |
6513623 |
caagttgataattatgaatgttgatcattttagattgaggcaaaggaattggtcttgcatgacattgatgttcctagtgctcttactg |
6513710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 567
Target Start/End: Original strand, 42672167 - 42672249
Alignment:
| Q |
485 |
cctaaacatggtcgtccaccaactcatgaagaattgcaccaattttttcttcccttccgtggattttgtgctagaaaaggggt |
567 |
Q |
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| T |
42672167 |
cctaaacaaggtcgtccacctaccgaagaagaattgcatcagttctttctccccttccgaggattttgtgctcgaaaaggggt |
42672249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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