View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11987_low_3 (Length: 512)
Name: NF11987_low_3
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11987_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 23391890 - 23391392
Alignment:
| Q |
1 |
tgtgttgttgtttcggcaaactaattcaattttcggaacgcagccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23391890 |
tgtgttgttgtttccgcaaactaattcaattttcggaacacaaccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttc |
23391791 |
T |
|
| Q |
101 |
aggcattcacatttcggcacattgccatccatattgcatatagaattagcaccacacattgcataattatcacatgaatcttccgcgccggtgtagataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
23391790 |
aggcattcacatttcggcacattgccatccatattgcatatagaattagcaccacacattgcataattatcacatgaatcttccgcgacggtgtagataa |
23391691 |
T |
|
| Q |
201 |
ctatccttgagctcgaatgacttgtccaacataaagcctgcaaatttcctgtgagggacagtctatatacgcaaatcattgatctatcaacgacttcata |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23391690 |
ctatccttgagctagaatgacttgtccaacataaagcctgcaaatttcctgtaagggacagtctatatacgcaaatcattgatctatcaacgacttcata |
23391591 |
T |
|
| Q |
301 |
tcgatgatacacttctttgtcagttatgacaaattcaaatatttgcttcttttttaacggttgtgttggatatcccgtaaaagagcgaccgttccacgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23391590 |
tcgatgatacacttctttgtcagttatgacaaattcaaatatttgcttcttttttaatggttgtgttggatatcccgtaaaagagcgaccgttccacgat |
23391491 |
T |
|
| Q |
401 |
cctactctcaattttatggtggaccccttcattataactacttggggatatcctctgaggtccacaccactagaatattctccctttgctggatcatct |
499 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
23391490 |
cctactctcaattttatggcggaccccttcattataactacttggggatatcctcggaggtcaacaccactagaatattctccctttgctggatcatct |
23391392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 23287498 - 23287996
Alignment:
| Q |
1 |
tgtgttgttgtttcggcaaactaattcaattttcggaacgcagccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23287498 |
tgtgttgttgtttccgcaaactaattcaattttcggaacgcagccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttc |
23287597 |
T |
|
| Q |
101 |
aggcattcacatttcggcacattgccatccatattgcatatagaattagcaccacacattgcataattatcacatgaatcttccgcgccggtgtagataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
23287598 |
aggcattcacatttcggcacattgccatccatattgcatatagaattagcaccacacattgcataattatcacatgaatcttccgcgtcggtgtagataa |
23287697 |
T |
|
| Q |
201 |
ctatccttgagctcgaatgacttgtccaacataaagcctgcaaatttcctgtgagggacagtctatatacgcaaatcattgatctatcaacgacttcata |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23287698 |
ctatccttgagcttgaatgacttgtccaacataaagcctgcaaatttcctgtaagggacagtctatatacgcaaatcattgatctatcaacgacttcata |
23287797 |
T |
|
| Q |
301 |
tcgatgatacacttctttgtcagttatgacaaattcaaatatttgcttcttttttaacggttgtgttggatatcccgtaaaagagcgaccgttccacgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||| ||||| ||| |
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|
| T |
23287798 |
tcgatgatacacttctttgtcagttatgacaaattcaaatatttgcttctctttcaatggttgtgttggatatccggtaaaagagcgaccattccatgat |
23287897 |
T |
|
| Q |
401 |
cctactctcaattttatggtggaccccttcattataactacttggggatatcctctgaggtccacaccactagaatattctccctttgctggatcatct |
499 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23287898 |
cctactctcaattttatggcggaccccttcattataactacttgtggatatcctcggaggtcaacaccactagaatattctccctttgctggatcatct |
23287996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 28 - 456
Target Start/End: Complemental strand, 23384234 - 23383806
Alignment:
| Q |
28 |
aattttcggaacgcagccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcacatttcggcacattgcca |
127 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||| | |||||||||||| || ||||| | |
|
|
| T |
23384234 |
aattttcggaacacaaccactagaccaatatgatatattccactgttcgagaaacttaggaacataaccttttaagcattcacatttaggaacattttcg |
23384135 |
T |
|
| Q |
128 |
tccatattgcatatagaattagcaccacacattgcataattatcacatgaatcttccgcgccggtgtagataactatccttgagctcgaatgacttgtcc |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||| || | ||| |||||||| ||| | | |||||||| |
|
|
| T |
23384134 |
tccatattgcatactgaattagcaccacacattgcataactatcacacgaatcttccatgccagtttcgatcactatcctatcgcttgtttcacttgtcc |
23384035 |
T |
|
| Q |
228 |
aacataaagcctgcaaatttcctgtgagggacagt--ctatatacgcaaatcattgatctatcaacgacttcatatcgatgatacacttctttgtcagtt |
325 |
Q |
| |
|
|| |||||| ||||||||||| |||| ||| || || ||| | || || ||||||| || |||||| | ||||||||||||||||||||| |
|
|
| T |
23384034 |
aagctaaagcatgcaaatttcccaaaggggagagtgcataaatttgcacacca--gagctatcaatgagttcataccaatgatacacttctttgtcagtc |
23383937 |
T |
|
| Q |
326 |
atgacaaattcaaatatttgcttcttttttaacggttgtgttggatatcccgtaaaagagcgaccgttccacgatcctactctcaattttatggtggacc |
425 |
Q |
| |
|
|||||||||||| || ||||||| | ||||||||||||| |||||||||| ||||||| |||| ||||| ||||||| ||||||| |||| || | |
|
|
| T |
23383936 |
atgacaaattcatatctttgcttttgttttaacggttgtattggatatccggtaaaagtttgaccattccatgatcctattctcaatcttatcacagatc |
23383837 |
T |
|
| Q |
426 |
ccttcattataactacttggggatatcctct |
456 |
Q |
| |
|
||||||| | ||||| ||| ||||||||||| |
|
|
| T |
23383836 |
ccttcataacaactatttgaggatatcctct |
23383806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 456
Target Start/End: Original strand, 23343009 - 23343437
Alignment:
| Q |
28 |
aattttcggaacgcagccaccagaccaatatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcacatttcggcacattgcca |
127 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||| | |||||||||||| || ||||| | |
|
|
| T |
23343009 |
aattttcggaacacaaccactagaccaatatgatatattccactgttcgtgaaacttaggaacataaccttttaagcattcacatttaggaacattttcg |
23343108 |
T |
|
| Q |
128 |
tccatattgcatatagaattagcaccacacattgcataattatcacatgaatcttccgcgccggtgtagataactatccttgagctcgaatgacttgtcc |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||| || | ||| |||||||| ||| | | |||||||| |
|
|
| T |
23343109 |
tccatattgcatactgaattagcaccacacattgcataactatcacacgaatcttccatgccagtttcgatcactatcctatcgcttgtttcacttgtcc |
23343208 |
T |
|
| Q |
228 |
aacataaagcctgcaaatttcctgtgagggacagt--ctatatacgcaaatcattgatctatcaacgacttcatatcgatgatacacttctttgtcagtt |
325 |
Q |
| |
|
|| |||||| |||| |||||| |||| ||| || || ||| | || || ||||||| || |||||| | ||||||||||||||||||||| |
|
|
| T |
23343209 |
aagctaaagcatgcatatttcccaaaggggagagtgcataaatttgcacacca--gagctatcaatgagttcataccaatgatacacttctttgtcagtc |
23343306 |
T |
|
| Q |
326 |
atgacaaattcaaatatttgcttcttttttaacggttgtgttggatatcccgtaaaagagcgaccgttccacgatcctactctcaattttatggtggacc |
425 |
Q |
| |
|
|||||||||||| || ||||||| | ||||||||||||| |||||||||| ||||||| |||| ||||| ||||||| ||||||| |||| || | |
|
|
| T |
23343307 |
atgacaaattcatatctttgcttttgttttaacggttgtattggatatccggtaaaagtttgaccattccatgatcctattctcaatcttatcacagatc |
23343406 |
T |
|
| Q |
426 |
ccttcattataactacttggggatatcctct |
456 |
Q |
| |
|
||||||| | ||||| ||| ||||||||||| |
|
|
| T |
23343407 |
ccttcataacaactatttgaggatatcctct |
23343437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 23363386 - 23363489
Alignment:
| Q |
55 |
atatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcacatttcggcacattgccatccatattgcatatagaattagcacca |
154 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||| | ||||| |||||||| | || ||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
23363386 |
atatgatatttgccattgttgaggaaacttaggaacatagcctttcacacattcacaagtgggaacatttccatccatattgcatatagaataaccacca |
23363485 |
T |
|
| Q |
155 |
caca |
158 |
Q |
| |
|
|||| |
|
|
| T |
23363486 |
caca |
23363489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 23348339 - 23348236
Alignment:
| Q |
55 |
atatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcacatttcggcacattgccatccatattgcatatagaattagcacca |
154 |
Q |
| |
|
||||||||| | | |||||| ||||||||||||||| || | ||||| |||||||| | || ||||| |||| ||||||||||||||||| | ||||| |
|
|
| T |
23348339 |
atatgatatttgcaattgttgaggaaacttaggaacgtagcctttcacacattcacaagtgggaacattcccattcatattgcatatagaataaccacca |
23348240 |
T |
|
| Q |
155 |
caca |
158 |
Q |
| |
|
|||| |
|
|
| T |
23348239 |
caca |
23348236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 3980380 - 3980441
Alignment:
| Q |
50 |
gaccaatatgatatattccattgttcaggaaacttaggaacataacttttcaggcattcaca |
111 |
Q |
| |
|
|||||| ||| || |||||||| |||||||||||||||| |||| | ||||| ||||||||| |
|
|
| T |
3980380 |
gaccaaaatgctagattccattcttcaggaaacttaggagcatatcctttcatgcattcaca |
3980441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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