View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11987_low_5 (Length: 487)
Name: NF11987_low_5
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11987_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 140 - 478
Target Start/End: Complemental strand, 1196854 - 1196516
Alignment:
| Q |
140 |
tgacccaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactgtattacctcaacaccacattcacaagccaatttcaacca |
239 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1196854 |
tgacacaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactctattacctcaacaccacattcacaagccaatttcaacca |
1196755 |
T |
|
| Q |
240 |
aatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattctt |
339 |
Q |
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| T |
1196754 |
aatatcaacatcctttgacatgtacttaggtacaaaaccgtttaaatcgatcttaaattctttgataggcaaactttggtcacgaaacattagcattctt |
1196655 |
T |
|
| Q |
340 |
cttttcacataatcaccaaattctaagatctttctcttcctcacgctatcttccattggtggtggagacattcctataatttgattactatggaaataca |
439 |
Q |
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| T |
1196654 |
ctcttcacataattaccaaattctaagatctttctcttcctcacactatcttccattggtggtggagacattcctataatttgattactatggaaataca |
1196555 |
T |
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| Q |
440 |
atatgggaaaggtataccatgtgactaaccaagcctttg |
478 |
Q |
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| T |
1196554 |
atatgggaaaggtataccatgtgactaaccaagcctttg |
1196516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 189 - 476
Target Start/End: Complemental strand, 1180463 - 1180176
Alignment:
| Q |
189 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaaatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |||| |
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| T |
1180463 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgtacctaactacaaaaccattcaaattg |
1180364 |
T |
|
| Q |
289 |
agcttaaattttttgatagctaatctttggtcaagaaacattagcattcttcttttcacataatcaccaaattctaagatctttctcttcctcacgctat |
388 |
Q |
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||| |||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1180363 |
agcctaaattttttgatagccaaactttggtcacgaaacattagcattcttctcttcacataatcaccaaattctaagatctttctcttcctcacactat |
1180264 |
T |
|
| Q |
389 |
cttccattggtggtggagacattcctataatttgattactatggaaatacaatatgggaaaggtataccatgtgactaaccaagcctt |
476 |
Q |
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| T |
1180263 |
cttccattggtggtggagacattcctataatttgattactatggaaatacaatataggaaaagtataccatgtgtctaaccaagcctt |
1180176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 1197139 - 1196996
Alignment:
| Q |
1 |
ttgctcaaagcacgacttaaaaattaaggagcatggaagacaatgacataccttaatgaatgctttggcgcacgaaaaag-aatagttgcagg---acag |
96 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
1197139 |
ttgcttaaagcacgacttaaaatttaaggagcatggaagacaatgacataccttaatgaatgctttggcgcatgaaaaagaaatagttgcaggacaacag |
1197040 |
T |
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| Q |
97 |
cttgcaagtaagatatttacatgagacgagaacaaatattcttt |
140 |
Q |
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| T |
1197039 |
cttgcaagtaagataattacatgagacgagaacaaatattcttt |
1196996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 282 - 399
Target Start/End: Complemental strand, 1185747 - 1185630
Alignment:
| Q |
282 |
cacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattcttcttttcacataatcaccaaattctaagatctttctcttcctc |
381 |
Q |
| |
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||||||||||||||||| |||||||| || ||||| ||| |||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
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| T |
1185747 |
cacattgagcttaaattctttgatagtcaagctttgatcacgaaattttagcattctccttttcacataatcacaaaattctaaggtctttctcttcctc |
1185648 |
T |
|
| Q |
382 |
acgctatcttccattggt |
399 |
Q |
| |
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|| |||||||| |||||| |
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| T |
1185647 |
acactatcttctattggt |
1185630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1186658 - 1186577
Alignment:
| Q |
1 |
ttgctcaaagcacgacttaaaaattaaggagcatggaagacaatgacataccttaatgaatgctttggcgcacgaaaaagaa |
82 |
Q |
| |
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|||||||||||||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1186658 |
ttgctcaaagcacgacttaaaattgaaagagcatggaagacaatgacatacctcaatgaatgctttggcgtacgaaaaagaa |
1186577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 1192397 - 1192334
Alignment:
| Q |
1 |
ttgctcaaagcacgacttaaaaattaaggagcatggaagacaatgacataccttaatgaatgctttg |
67 |
Q |
| |
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||||||||||||| |||||||| || |||||||| |||||||||||||||| |||||||| |||| |
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| T |
1192397 |
ttgctcaaagcacaacttaaaattt---gagcatgggagacaatgacatacctcaatgaatggtttg |
1192334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 1192288 - 1192245
Alignment:
| Q |
94 |
cagcttgcaagtaagatatttacatgagacgagaacaaatattc |
137 |
Q |
| |
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||||||| |||||||||||||||| |||||||||| |||||||| |
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| T |
1192288 |
cagcttgaaagtaagatatttacaagagacgagaataaatattc |
1192245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 1185834 - 1185801
Alignment:
| Q |
183 |
aacccattgggaatactgtattacctcaacacca |
216 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
1185834 |
aacccattgggaatactctattacctcaacacca |
1185801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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