View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11987_low_7 (Length: 378)
Name: NF11987_low_7
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11987_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 13299413 - 13299756
Alignment:
| Q |
18 |
ctttcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccattcttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13299413 |
ctttcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccattcttaa |
13299512 |
T |
|
| Q |
118 |
ttttcaccttagttaatttatgtccctagctagggtttgttaattaaacagttagataatttctttgactttatgtataaatagnnnnnnnnnnnnnnnn |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13299513 |
ttttcaccttagttaatttatgtccctagctagggtttgttaattaaacagttagataatttctttgactttatgtataaatag--aaaaaaaatgaaaa |
13299610 |
T |
|
| Q |
218 |
nnnnncacaagcttaagaatcttacttggttaatattgattaaagatgagtgagagtgattgttggtgcaggaagaagagtttccattt--tgagttgta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13299611 |
taaaacacaagcttaagaatcttacttggttaatattgattaaagatgagtgagggtgattgatggtgcaggaagaagagtttccattttgtgagttgta |
13299710 |
T |
|
| Q |
316 |
agatgcaaagagaaagttttataagcagaaaggtattggatgaaagg |
362 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13299711 |
agatgc-aagagaaagttttataagcagaaaggtattgggtgaaagg |
13299756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 36925700 - 36925793
Alignment:
| Q |
18 |
ctttcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccat |
111 |
Q |
| |
|
||||||| ||||| || ||||| |||||||||||||||||||| | |||||| | || || |||||||||||||||||||| ||||||||||| |
|
|
| T |
36925700 |
ctttcttcatcaacccttttcttctctttgagaaagtcacttgacggcttgtcaaattctcaatccttcgaatcacaatctttcctcttcccat |
36925793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 2115313 - 2115220
Alignment:
| Q |
18 |
ctttcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccat |
111 |
Q |
| |
|
||||||| | |||||| ||||| || |||||||||||||||||||||||||| | ||||| ||||||| ||| ||||||| ||||||||||| |
|
|
| T |
2115313 |
ctttcttcaacaatccatttcttctttttgagaaagtcacttgcctgcttgttgaattgtcaatccttctaattgcaatctttcctcttcccat |
2115220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University