View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11987_low_8 (Length: 371)

Name: NF11987_low_8
Description: NF11987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11987_low_8
NF11987_low_8
[»] chr5 (3 HSPs)
chr5 (65-169)||(19197196-19197300)
chr5 (69-167)||(19201281-19201379)
chr5 (17-50)||(19197285-19197318)
[»] chr4 (1 HSPs)
chr4 (189-355)||(13460657-13460826)
[»] chr8 (1 HSPs)
chr8 (252-300)||(14913611-14913658)
[»] chr3 (1 HSPs)
chr3 (252-300)||(7346878-7346925)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 19197300 - 19197196
Alignment:
Q  65 ttgacaaatatccaggagttttagaagcaaagatctaagtggttgtacataattctatcaatagctcttagacatcattaatactaaaacaataaatgat 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19197300 ttgacaaatatccagtagttttagaagcaaagatctaagtggttgtacatagttctatcaatagctcttagtcatcattaatactaaaacaataaatgat 19197201  T
Q  165 gctat 169  Q
    |||||    
T  19197200 gctat 19197196  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 19201379 - 19201281
Alignment:
Q  69 caaatatccaggagttttagaagcaaagatctaagtggttgtacataattctatcaatagctcttagacatcattaatactaaaacaataaatgatgct 167  Q
    |||| ||| |||||||| ||| ||||||||||||||| ||||||||| ||||||| ||||||||||  ||||||| || || |||||||| ||||||||    
T  19201379 caaacatcaaggagtttgagaggcaaagatctaagtgcttgtacatagttctatctatagctcttactcatcatttatgctcaaacaatacatgatgct 19201281  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 19197318 - 19197285
Alignment:
Q  17 agttacttgaagagttaattgacaaatatccagt 50  Q
    ||||||||||||||||||||||||||||||||||    
T  19197318 agttacttgaagagttaattgacaaatatccagt 19197285  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 355
Target Start/End: Original strand, 13460657 - 13460826
Alignment:
Q  189 gtggcactgacacgtcattacgtggcactgcc---atgtcattattattattttnnnnnnnnnnnncttcagaatttctttttaatggttctttccaaaa 285  Q
    ||||||||||||||||||||||||||||||||   | |||||||||||||||||            ||||| ||||||| ||||||||||||||||||||    
T  13460657 gtggcactgacacgtcattacgtggcactgccgccacgtcattattattatttttttttaaaaaaacttcaaaatttctgtttaatggttctttccaaaa 13460756  T
Q  286 tattaattgaacattattatcaaaatacccttannnnnnnaattaattaaaa-ataactatttctctcttc 355  Q
    ||||||||||| ||||||| |||||||||||||       |||||||||||| ||||||||||||||||||    
T  13460757 tattaattgaatattattaccaaaataccctta-ttttttaattaattaaaagataactatttctctcttc 13460826  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 14913611 - 14913658
Alignment:
Q  252 cttcagaatttctttttaatggttctttccaaaatattaattgaacatt 300  Q
    ||||||||||||| ||||||| || ||||||||| ||||||||||||||    
T  14913611 cttcagaatttctatttaatgttt-tttccaaaaaattaattgaacatt 14913658  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 7346878 - 7346925
Alignment:
Q  252 cttcagaatttctttttaatggttctttccaaaatattaattgaacatt 300  Q
    ||||||||||||| ||||||| || ||||||||| ||||||||||||||    
T  7346878 cttcagaatttctatttaatgttt-tttccaaaaaattaattgaacatt 7346925  T

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