View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11988_high_2 (Length: 611)
Name: NF11988_high_2
Description: NF11988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11988_high_2 |
 | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0186 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 187 - 602
Target Start/End: Original strand, 24798 - 25214
Alignment:
| Q |
187 |
atcatttacttggtcaaatcattttagtatctggaaaacatatgtaggtattttgattttagttagttattatcaaatccaagcgtagataacttgttaa |
286 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
24798 |
atcatttagttggtcaaatcatattagtatctggaaaacatacgtagatattctgattttagttagttactatcaaatccaagggtagataacttgttaa |
24897 |
T |
|
| Q |
287 |
gactcatgatgcatgtaagctattttagagtatattttagtgtcataaaaattgtctcttcattgcaaattcgatatgaaactacaacttttttctcaag |
386 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
24898 |
gactcatgatgcatgtaagctattttaaagtagattttagtgtcataaaaattgtctctttattgcaaattcaatatgaaactacgacttttttttcaag |
24997 |
T |
|
| Q |
387 |
tttccttaattgtgatctaataaggagttatgaaactcgcttttgctctttattttctccaaataccttacaactcccatctcctaattgga-agcttgt |
485 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
24998 |
tgtccttaattgtgatctaataaggagttgtgaaactcacttttactctttattttctccaaatacgttacaactcccatctcctagttggacagcttgt |
25097 |
T |
|
| Q |
486 |
tgaaactctagctgaaattgaatttcaaacaccaattatcaaggagatttcaccttattttacgagcctttattattctttttcttgattgccacttaca |
585 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25098 |
tgaaactctagctgaaattgaatttcaagcaccaattatcaaggagatttcaccatattttacgagcctttattattcattttcttgatttccacttaca |
25197 |
T |
|
| Q |
586 |
ttttatatgtgtctgtg |
602 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
25198 |
ttttatatgtgtttgtg |
25214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 8025957 - 8025808
Alignment:
| Q |
19 |
gtgtcattcttaaggagttgttgacaagctcacaaggtatgcattcttcttccttaaacccccctttcttgctcaaataatcacttgagtgtcaaagtgc |
118 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8025957 |
gtgtcattcataaggagttcttgacaagctcacaaggtatacattcttcttccttaaacccccctttcttgctcaaataatcacttgagtgtcggagtgc |
8025858 |
T |
|
| Q |
119 |
gttcatgtacttccatcgatccacttttgctatgcgtatctttatcctcc |
168 |
Q |
| |
|
|| |||||||||||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
8025857 |
gtgcatgtacttccatcgacccactttcgctatgcgtaactttatcctcc |
8025808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 187 - 334
Target Start/End: Complemental strand, 1085199 - 1085052
Alignment:
| Q |
187 |
atcatttacttggtcaaatcattttagtatctggaaaacatatgtaggtattttgattttagttagttattatcaaatccaagcgtagataacttgttaa |
286 |
Q |
| |
|
|||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
1085199 |
atcatttacttggtcaaatcatatcaatatttggaaaacatatgtaggtattttgattttagttagtttctatcaaatccaagggtagatagcttgttaa |
1085100 |
T |
|
| Q |
287 |
gactcatgatgcatgtaagctattttagagtatattttagtgtcataa |
334 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||| |||||||| |||||| |
|
|
| T |
1085099 |
gactcattatgcatgtaagttattttaaagtagattttagtatcataa |
1085052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 334
Target Start/End: Original strand, 24997459 - 24997601
Alignment:
| Q |
192 |
ttacttggtcaaatcattttagtatctggaaaacatatgtaggtattttgattttagttagttattatcaaatccaagcgtagataacttgttaagactc |
291 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
24997459 |
ttacttggtcaaatcatatcagtatttggaaaacatatgtaggtattttgattttagttagtttctatcaaatccaagggtagatagcttgttaagactc |
24997558 |
T |
|
| Q |
292 |
atgatgcatgtaagctattttagagtatattttagtgtcataa |
334 |
Q |
| |
|
|| ||||||||||| || ||| |||| |||||||| |||||| |
|
|
| T |
24997559 |
attatgcatgtaagtgatattaaagtagattttagtatcataa |
24997601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 334
Target Start/End: Original strand, 11352083 - 11352224
Alignment:
| Q |
192 |
ttacttggtcaaatcattttagtatctggaaaacatatgtaggtattttgattttagttagttattatcaaatccaagcgtagataacttgttaagactc |
291 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
11352083 |
ttacttggtcaaatcatatcagtatttggaaaacatatgtaggtatttt-attttagttagtttctatcaaatccaagggtagatagcttgttaagactc |
11352181 |
T |
|
| Q |
292 |
atgatgcatgtaagctattttagagtatattttagtgtcataa |
334 |
Q |
| |
|
|| ||||||||||| ||||||| |||| |||||||| |||||| |
|
|
| T |
11352182 |
attatgcatgtaagttattttaaagtagattttagtatcataa |
11352224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University