View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11988_high_3 (Length: 478)
Name: NF11988_high_3
Description: NF11988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11988_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 25085435 - 25085629
Alignment:
| Q |
4 |
aatttttctgttcgtatagaattttcaagaacttgtttttcattagtttacttcccttcttagttgtgagttgtatatctcgcagaaaacatattgatat |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25085435 |
aatttttctgtttgtatagaattttcaagaacttgtttttcattagtttacttctcttcttagttgtgagttgtatatctctcagaaaacatattgatat |
25085534 |
T |
|
| Q |
104 |
tgtttatttaaattttataaccacagtgagttaattaatttggtgttagctatatttggagctataacaataaataatgctaaaattttgttctc |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25085535 |
tgtttatttaaatttaataaccacagtgagttaattaatttggtgttagctatattcggagctataacaataaataatgctaaaattttgttctc |
25085629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 215 - 358
Target Start/End: Original strand, 25086143 - 25086286
Alignment:
| Q |
215 |
aacttaagagatggtagtagacctatctttcattgtgtttctattcctgtatactttgcatatttttaatttgatttgtttttcaatctttgtagtacta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
25086143 |
aacttaagagatggtagtagacctatctttcattgtgtttctattcctgtatactttgcatatttttattttgatttgttttgcaatctttgtagtacta |
25086242 |
T |
|
| Q |
315 |
gttggtgttggtttcaggcatgatacaacggcaaattcgattac |
358 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
25086243 |
gctggtgttggtttcaggcatgatacaatggcatattcgattac |
25086286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 423 - 465
Target Start/End: Original strand, 25086351 - 25086393
Alignment:
| Q |
423 |
acattcatttttgtcaagttttgttttgattctgatgtttatg |
465 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25086351 |
acattcatttttgtcaagttttgttttcattctgatgtttatg |
25086393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University