View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11988_high_4 (Length: 447)
Name: NF11988_high_4
Description: NF11988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11988_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 32382205 - 32381787
Alignment:
| Q |
10 |
agcaaaggaaaaactgttggcaagatggtgtgccaggaacaaactgtcccatcgcaccaggaacaaactacacataccgtttccaagtgaaggatcaaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382205 |
agcaaaggaaaaactgttggcaagatggtgtgccaggaacaaactgtcccatcgcacctggaacaaactacacataccgtttccaagtgaaggatcaaat |
32382106 |
T |
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| Q |
110 |
cggtagctacttctattatcctagcttagggatgcacagagcagccggtggtttcggtggcctccgcatcaacagcagattactcattccagtcccatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382105 |
cggtagctacttctattatcctagcttagggatgcacagagcagccggtggtttcggtggcctccgcatcaacagcagattactcattccagtcccatat |
32382006 |
T |
|
| Q |
210 |
gctgatcccgaagatgattacaccgtcctaatcggtgattggttcaccaagagccactccaccctcagcaaattactcgacagtggtcgtgcccttggaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382005 |
gctgatcccgaagatgattacaccgtcctaatcggtgactggttcaccaagagccactccaccctcagcaaattactcgacagtggtcgtgcccttggaa |
32381906 |
T |
|
| Q |
310 |
gaccacaagctgttcttgttaacggccaaaacgccaaaggtgacggatctgacaaaccactcttcacaatgaagccaggaaaaacctacaaatacagaat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32381905 |
gaccacaagctgttcttgttaacggccaaaacgccaaaggtgacggatctgacaaaccactcttcacaatgaagccaggaaaaacctacaaatacagaat |
32381806 |
T |
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| Q |
410 |
ctgcaatgttggtcttaaa |
428 |
Q |
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||||||||||||||||||| |
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| T |
32381805 |
ctgcaatgttggtcttaaa |
32381787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 37634770 - 37634709
Alignment:
| Q |
366 |
ccactcttcacaatgaagccaggaaaaacctacaaatacagaatctgcaatgttggtcttaa |
427 |
Q |
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| T |
37634770 |
ccactctacacaatgaagccgggaaaaacctacaaatacagaatctgcaatactggtcttaa |
37634709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 37640598 - 37640537
Alignment:
| Q |
366 |
ccactcttcacaatgaagccaggaaaaacctacaaatacagaatctgcaatgttggtcttaa |
427 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
37640598 |
ccactctacacaatgaagccgggaaaaacctacaaatacagaatctgcaatactggtcttaa |
37640537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 37648885 - 37648824
Alignment:
| Q |
366 |
ccactcttcacaatgaagccaggaaaaacctacaaatacagaatctgcaatgttggtcttaa |
427 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
37648885 |
ccactctacacaatgaagccgggaaaaacctacaaatacagaatctgcaatactggtcttaa |
37648824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 37637684 - 37637623
Alignment:
| Q |
366 |
ccactcttcacaatgaagccaggaaaaacctacaaatacagaatctgcaatgttggtcttaa |
427 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
37637684 |
ccactctacacaatgaagccgggaaaaacctacaaatatagaatctgcaatactggtcttaa |
37637623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 37645972 - 37645911
Alignment:
| Q |
366 |
ccactcttcacaatgaagccaggaaaaacctacaaatacagaatctgcaatgttggtcttaa |
427 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
37645972 |
ccactctacacaatgaagccgggaaaaacctacaaatatagaatctgcaatactggtcttaa |
37645911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 37651789 - 37651736
Alignment:
| Q |
374 |
cacaatgaagccaggaaaaacctacaaatacagaatctgcaatgttggtcttaa |
427 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
37651789 |
cacaatgaagccgggaaaaacctacaaatatagaatctgcaatactggtcttaa |
37651736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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