View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11988_high_5 (Length: 430)
Name: NF11988_high_5
Description: NF11988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11988_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 38422908 - 38423319
Alignment:
| Q |
1 |
caagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtctgttccacttgaatgatgatgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38422908 |
caagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtgtgttccacttgaatgatgatgattt |
38423007 |
T |
|
| Q |
101 |
ccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattccgttttttcctttgattaattac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38423008 |
ccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattacgttttttcctttgattaattac |
38423107 |
T |
|
| Q |
201 |
tcaaataatcaactttgctttgtgtttgcaactaagagatgggttggggtttatattaaggagaaaaggaaggttccacgttggcttttcttagtactca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423108 |
tcaaataatcaactttgctttgtgtttgcaactaagagatgggttggggtttatattaaggagaaaaggaaggttccacgttggcttttcttagtactca |
38423207 |
T |
|
| Q |
301 |
aggnnnnnnnaatgggatagagaaaaagaaaattaggaatatagttgaaaaacaagtgttttatttatgaataataaataatcctcataatatggtcatg |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38423208 |
aggtttttttaatgggatagagaaaaagaaaattaggaatatagttgaaaaacaagtgttttatttatgaataataaataatcctcataatatggtcatg |
38423307 |
T |
|
| Q |
401 |
tttggtggtttg |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38423308 |
tttggtggtttg |
38423319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 38413021 - 38413218
Alignment:
| Q |
1 |
caagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagtaagtctgttccacttgaat---gatgatga |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||| || |
|
|
| T |
38413021 |
caagaacaacagcctcaaaggcagagacaaccttaaaaacaatatcttccatgaatgaaaccggcgaagtaagtctgttccacctgaatcctgatgaaga |
38413120 |
T |
|
| Q |
98 |
tttccacaaaaacttcaacctcaatgcttccttcttcagtctcttcaacaacgatcttttcttcccaacaattgacattccgttttttcctttgatta |
195 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
38413121 |
ttgccacaaaaacttcaacctcaatgtttccttcttcagcctcttcaacaacgatcttttcttctcaaccattgacattccgtttttctctttgatta |
38413218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University