View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11988_low_1 (Length: 721)

Name: NF11988_low_1
Description: NF11988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11988_low_1
NF11988_low_1
[»] chr8 (13 HSPs)
chr8 (1-434)||(32914986-32915419)
chr8 (446-562)||(32916032-32916148)
chr8 (321-410)||(24945367-24945456)
chr8 (561-643)||(14342185-14342267)
chr8 (562-643)||(4076768-4076849)
chr8 (592-646)||(5749058-5749112)
chr8 (659-703)||(41075693-41075737)
chr8 (562-643)||(43065904-43065985)
chr8 (601-641)||(45502766-45502806)
chr8 (659-702)||(2599574-2599617)
chr8 (657-702)||(10391399-10391444)
chr8 (657-702)||(28898038-28898083)
chr8 (657-702)||(45413632-45413677)
[»] chr1 (10 HSPs)
chr1 (204-416)||(2308149-2308361)
chr1 (558-643)||(40030888-40030973)
chr1 (562-643)||(1995054-1995135)
chr1 (592-703)||(19989281-19989390)
chr1 (560-643)||(27325624-27325708)
chr1 (593-643)||(44797497-44797547)
chr1 (562-643)||(2402924-2403005)
chr1 (592-643)||(32267494-32267545)
chr1 (592-641)||(15066049-15066099)
chr1 (657-702)||(39858390-39858435)
[»] chr3 (6 HSPs)
chr3 (205-410)||(9359281-9359486)
chr3 (592-643)||(38247900-38247951)
chr3 (558-638)||(48034803-48034883)
chr3 (565-638)||(8496814-8496887)
chr3 (593-643)||(50989305-50989355)
chr3 (593-643)||(51092437-51092487)
[»] chr4 (14 HSPs)
chr4 (562-703)||(51579622-51579763)
chr4 (562-703)||(24059134-24059273)
chr4 (561-638)||(17044109-17044186)
chr4 (592-643)||(25164500-25164551)
chr4 (592-643)||(39631039-39631090)
chr4 (592-643)||(45995924-45995975)
chr4 (592-703)||(5817409-5817520)
chr4 (654-703)||(51579362-51579411)
chr4 (592-643)||(37605720-37605771)
chr4 (319-414)||(51091110-51091205)
chr4 (592-638)||(3287186-3287232)
chr4 (657-703)||(41277257-41277303)
chr4 (561-643)||(55281310-55281392)
chr4 (657-702)||(50498253-50498298)
[»] chr7 (8 HSPs)
chr7 (204-416)||(43805405-43805617)
chr7 (592-703)||(47480043-47480152)
chr7 (562-643)||(46576241-46576322)
chr7 (592-643)||(30922739-30922790)
chr7 (657-702)||(42974472-42974517)
chr7 (561-638)||(33496606-33496683)
chr7 (595-638)||(48460759-48460802)
chr7 (592-643)||(38754926-38754977)
[»] scaffold0001 (1 HSPs)
scaffold0001 (219-406)||(520028-520215)
[»] chr6 (3 HSPs)
chr6 (561-646)||(9045931-9046016)
chr6 (592-643)||(14314015-14314066)
chr6 (592-643)||(34792680-34792731)
[»] chr5 (4 HSPs)
chr5 (559-643)||(13988349-13988433)
chr5 (562-643)||(11247294-11247375)
chr5 (561-643)||(36890478-36890560)
chr5 (592-643)||(20151476-20151527)
[»] chr2 (10 HSPs)
chr2 (558-643)||(13696960-13697045)
chr2 (592-643)||(17823681-17823732)
chr2 (559-643)||(32599244-32599328)
chr2 (657-702)||(33300022-33300067)
chr2 (558-643)||(14242519-14242604)
chr2 (223-410)||(41195074-41195261)
chr2 (592-646)||(40095362-40095416)
chr2 (592-645)||(4434621-4434674)
chr2 (562-643)||(33555361-33555442)
chr2 (558-643)||(36272656-36272741)
[»] scaffold0533 (1 HSPs)
scaffold0533 (592-643)||(10260-10311)
[»] scaffold0933 (1 HSPs)
scaffold0933 (592-638)||(3085-3131)


Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 32914986 - 32915419
Alignment:
Q  1 ttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgtaatatgcgctcct 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914986 ttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgtaatatgcgctcct 32915085  T
Q  101 aaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtcactacaccccaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915086 aaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtcactacaccccaat 32915185  T
Q  201 tagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32915186 tagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactccaccgccatgaatta 32915285  T
Q  301 accacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915286 accacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaa 32915385  T
Q  401 tgatccacaaacctttcaaattatctacttcctc 434  Q
    ||||||||||||||||||||||||||||||||||    
T  32915386 tgatccacaaacctttcaaattatctacttcctc 32915419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 446 - 562
Target Start/End: Original strand, 32916032 - 32916148
Alignment:
Q  446 aagaggtgggggaaatggtggtggaaattaaggtattatcgtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 545  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32916032 aagaggtgggggaaatggtggaggatattaagttattatggtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 32916131  T
Q  546 cttggtgttccgtttta 562  Q
    |||||||||||||||||    
T  32916132 cttggtgttccgtttta 32916148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 321 - 410
Target Start/End: Complemental strand, 24945456 - 24945367
Alignment:
Q  321 atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 410  Q
    ||||||||||| |||||||||||| || |||||  ||||||| || ||||||||||| | ||||||||||||||||||||| ||||||||    
T  24945456 atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa 24945367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 643
Target Start/End: Original strand, 14342185 - 14342267
Alignment:
Q  561 taggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  14342185 taggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 14342267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 643
Target Start/End: Original strand, 4076768 - 4076849
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||| ||| ||||||       |||||||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  4076768 aggataatgtttcatgtacacacttttttccatacacatattgtaccactctatgtgagagtgtgtgagagacaatacatgt 4076849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 646
Target Start/End: Original strand, 5749058 - 5749112
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaag 646  Q
    |||||| ||||| |||||| | |||||||||||||| ||||||||||||||||||    
T  5749058 catacatacattataccaccccatgtgagagtgtgtgagagacaataaatgtaag 5749112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 703
Target Start/End: Original strand, 41075693 - 41075737
Alignment:
Q  659 tgtgggaaccatatgaacacatgtcacaattgtatatgggtgtac 703  Q
    |||||| |||| ||||||||||||||||||||||| |||||||||    
T  41075693 tgtggggaccacatgaacacatgtcacaattgtatgtgggtgtac 41075737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 643
Target Start/End: Original strand, 43065904 - 43065985
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||| |||||        |||||| ||||||||||| || |||||||||||||| |||||||||| ||||    
T  43065904 aggataatgttttatgtacacatttttttccatacatacattgtaccattccatgtgagagtgtgtgagagacaatacatgt 43065985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 601 - 641
Target Start/End: Complemental strand, 45502806 - 45502766
Alignment:
Q  601 attgtaccactctatgtgagagtgtgtaagagacaataaat 641  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  45502806 attgtaccactctatgtgagagtgtctaagaggcaataaat 45502766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 702
Target Start/End: Complemental strand, 2599617 - 2599574
Alignment:
Q  659 tgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||    
T  2599617 tgtggggaccacatgaacacatgtcacaattgtgtatgggtgta 2599574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 10391399 - 10391444
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  10391399 tgtgtggggaccacatggacacatgtcacaattgtgtatgggtgta 10391444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 702
Target Start/End: Complemental strand, 28898083 - 28898038
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  28898083 tgtgtggggaccacatggacacatgtcacaattgtgtatgggtgta 28898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 45413632 - 45413677
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  45413632 tgtgtggggaccatatggacacatgtcacaattgtgtatggatgta 45413677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 9e-69; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 204 - 416
Target Start/End: Complemental strand, 2308361 - 2308149
Alignment:
Q  204 ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc 303  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| || ||| |||||||||||| ||||||||| |||    
T  2308361 ctacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacc 2308262  T
Q  304 acaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatga 403  Q
    ||||| |||||||||| ||| ||||||||| | ||||||||| | |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  2308261 acaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatga 2308162  T
Q  404 tccacaaaccttt 416  Q
    |||||||||||||    
T  2308161 tccacaaaccttt 2308149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 40030973 - 40030888
Alignment:
Q  558 ttttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  40030973 ttttaggataatgtttcatgtacacactttttttcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 40030888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 643
Target Start/End: Complemental strand, 1995135 - 1995054
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  1995135 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 1995054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 703
Target Start/End: Complemental strand, 19989390 - 19989281
Alignment:
Q  592 catacacacattgtaccactct-atgtgagagtgtgtaagagacaataaatgtaagnnnnnnngtatgtgtgggaaccatatgaacacatgtcacaattg 690  Q
    |||||||||||||||||||||| |||||||||||||| |||||||  |||||||||        ||||||||| ||||| ||| |||||||||||| |||    
T  19989390 catacacacattgtaccactctcatgtgagagtgtgtgagagacacaaaatgtaagttttt---tatgtgtggaaaccacatggacacatgtcacacttg 19989294  T
Q  691 tatatgggtgtac 703  Q
    ||| ||| |||||    
T  19989293 tatgtggatgtac 19989281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 560 - 643
Target Start/End: Original strand, 27325624 - 27325708
Alignment:
Q  560 ttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtg-agagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||| ||| ||||||       ||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||    
T  27325624 ttaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgaagagtgtgtgagagacaatacatgt 27325708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 643
Target Start/End: Original strand, 44797497 - 44797547
Alignment:
Q  593 atacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||||||  |||||||||||||| |||||||||| ||||    
T  44797497 atacacacattgtaccacttcatgtgagagtgtgtgagagacaatacatgt 44797547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 643
Target Start/End: Original strand, 2402924 - 2403005
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||| ||| ||||||       |||||||||||||||||| || |||||||||||||  |||||||||| ||||    
T  2402924 aggataatgtttcatgtacacacttttttccatacacacattgtaccattccatgtgagagtgtgcgagagacaatacatgt 2403005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 32267494 - 32267545
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||| |||| |||||||||||||| |||| ||||| ||||    
T  32267494 catacacacattgtactactccatgtgagagtgtgtgagagccaatacatgt 32267545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 641
Target Start/End: Original strand, 15066049 - 15066099
Alignment:
Q  592 catacacacattgtaccactct-atgtgagagtgtgtaagagacaataaat 641  Q
    |||||| ||| ||||||||||| |||||||||||||| |||||||||||||    
T  15066049 catacatacaatgtaccactctcatgtgagagtgtgtgagagacaataaat 15066099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 702
Target Start/End: Complemental strand, 39858435 - 39858390
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  39858435 tgtgtggggaccacatggacacatgtcacaattgtgtatgggtgta 39858390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 9359281 - 9359486
Alignment:
Q  205 tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacca 304  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||  |||||| |||||||||||||||| |||||||| |    
T  9359281 tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaa 9359380  T
Q  305 caatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgat 404  Q
    |||| |||| |||||||||||||||||| ||||||||||| || || |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  9359381 caatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataat 9359480  T
Q  405 ccacaa 410  Q
    ||||||    
T  9359481 ccacaa 9359486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 643
Target Start/End: Complemental strand, 38247951 - 38247900
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  38247951 catacacacattgtaccactctatgtgagagtgtgtgagagacaatacatgt 38247900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 638
Target Start/End: Original strand, 48034803 - 48034883
Alignment:
Q  558 ttttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    |||| ||||||||||||||| ||||||       ||||||||||||||||||||  |||||||||||||| ||||||||||    
T  48034803 tttttggataatgttttatgtacacacttttttccatacacacattgtaccacttcatgtgagagtgtgtgagagacaata 48034883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 638
Target Start/End: Complemental strand, 8496887 - 8496814
Alignment:
Q  565 ataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    ||||||||| ||||||||||       |||||||||||| |||||||| |||||||||| ||| ||||||||||    
T  8496887 ataatgtttcatgcacacactttttttcatacacacattctaccactccatgtgagagtatgtgagagacaata 8496814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 643
Target Start/End: Complemental strand, 50989355 - 50989305
Alignment:
Q  593 atacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||| ||||    
T  50989355 atacacacattataccacttcatgtgagagtgtgtgagagacaatacatgt 50989305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 643
Target Start/End: Complemental strand, 51092487 - 51092437
Alignment:
Q  593 atacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||| ||||    
T  51092487 atacacacattataccacttcatgtgagagtgtgtgagagacaatacatgt 51092437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 562 - 703
Target Start/End: Complemental strand, 51579763 - 51579622
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaagnnnnnnngtatgtgt 661  Q
    |||||||||||||||| | ||||       ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||       ||||||||    
T  51579763 aggataatgttttatgtaaacactttctttcatacacacattgtaccaccccatgtgagagtgtgtaagagacaataaatgtgagtttttttgtatgtgt 51579664  T
Q  662 gggaaccatatgaacacatgtcacaattgtatatgggtgtac 703  Q
    ||||| || ||| ||||||||||||||||||| |||||||||    
T  51579663 gggaatcacatggacacatgtcacaattgtatttgggtgtac 51579622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 562 - 703
Target Start/End: Original strand, 24059134 - 24059273
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaagnnnnnnngtatgtgt 661  Q
    |||||||||||||||| ||||||       ||||||||||||||||||| | |||| ||||||||||||||||||||||||  |         | |||||    
T  24059134 aggataatgttttatgtacacactttcttccatacacacattgtaccaccccatgtaagagtgtgtaagagacaataaatg--atattttttttgtgtgt 24059231  T
Q  662 gggaaccatatgaacacatgtcacaattgtatatgggtgtac 703  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  24059232 gggaaccacatggacacatgtcacaattgtatgtgggtgtac 24059273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 561 - 638
Target Start/End: Complemental strand, 17044186 - 17044109
Alignment:
Q  561 taggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    ||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| ||||||||||    
T  17044186 taggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaata 17044109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 25164500 - 25164551
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  25164500 catacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 25164551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 39631039 - 39631090
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  39631039 catatacacattgtaccactctatgtgagagtgtgtgagagacaatacatgt 39631090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 45995924 - 45995975
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  45995924 catacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 45995975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 703
Target Start/End: Original strand, 5817409 - 5817520
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaagnnnnnnngtatgtgtgggaaccatatgaacacatgtcacaattgt 691  Q
    ||||||||||||||||||| | |||| | |||||||| |||||||||||| | ||       || |||||||| |||| ||| |||||||||||||||||    
T  5817409 catacacacattgtaccaccccatgtaaaagtgtgtaggagacaataaatatgagttttttggtgtgtgtggggaccacatggacacatgtcacaattgt 5817508  T
Q  692 atatgggtgtac 703  Q
     | |||||||||    
T  5817509 gtgtgggtgtac 5817520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 654 - 703
Target Start/End: Complemental strand, 51579411 - 51579362
Alignment:
Q  654 gtatgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgtac 703  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  51579411 gtatgtgtgggaaccacatggacacatgtcacaattgtatgtgggtgtac 51579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 37605720 - 37605771
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||| ||||    
T  37605720 catacacacattgtaccactccatgtgagagtgtgtgagggacaatacatgt 37605771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 414
Target Start/End: Complemental strand, 51091205 - 51091110
Alignment:
Q  319 agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacct 414  Q
    ||||| ||||||| |||||| ||||| |||||||| |  ||||||||  |||||||||   || ||||||||||||||||||| ||||| ||||||    
T  51091205 agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacct 51091110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 638
Target Start/End: Complemental strand, 3287232 - 3287186
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  3287232 catacacacattgtaccactccatgtgagagtgtgtgagagataata 3287186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 703
Target Start/End: Complemental strand, 41277303 - 41277257
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgtac 703  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||||    
T  41277303 tgtgtggggaccacatgaacacatgtcacaattgtatgtgggtgtac 41277257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 643
Target Start/End: Complemental strand, 55281392 - 55281310
Alignment:
Q  561 taggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||| ||| ||||||       |||||| |||||||||||||| |||||||| ||||| |||||||||| ||||    
T  55281392 taggataatgtttcatgtacacacttttttccatacatacattgtaccactccatgtgagaatgtgtgagagacaatacatgt 55281310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 702
Target Start/End: Complemental strand, 50498298 - 50498253
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||||    
T  50498298 tgtgtggggaccacatggacacatgtcacaattgtgtatgggtgta 50498253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 204 - 416
Target Start/End: Complemental strand, 43805617 - 43805405
Alignment:
Q  204 ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc 303  Q
    |||||||||| | || || ||||||||||||||| | ||||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| || |  ||     
T  43805617 ctacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgccacgactgcaca 43805518  T
Q  304 acaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatga 403  Q
    | ||| | |   ||||| |||||| | |||||| |||  |  || | |||||||||||| ||| ||||||| ||| || ||| ||||||||||||||| |    
T  43805517 ataatatacagtaaaagttcatcctcttgtttctccttgtagcggagaatcaaatgatttctcacttgccagataccctaaagagttgcatgccaaataa 43805418  T
Q  404 tccacaaaccttt 416  Q
    |||| ||||||||    
T  43805417 tccataaaccttt 43805405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 703
Target Start/End: Original strand, 47480043 - 47480152
Alignment:
Q  592 catacacacattgtaccactct-atgtgagagtgtgtaagagacaataaatgtaagnnnnnnngtatgtgtgggaaccatatgaacacatgtcacaattg 690  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||       |  ||||||||||||||||| ||||||||||||||||    
T  47480043 catacacacattgtaccacccccatgtgagagtgtgtaagagacaataaatgtaagtttttttg--tgtgtgggaaccatatggacacatgtcacaattg 47480140  T
Q  691 tatatgggtgtac 703  Q
    ||| |||||||||    
T  47480141 tat-tgggtgtac 47480152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 643
Target Start/End: Original strand, 46576241 - 46576322
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  46576241 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 46576322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 30922739 - 30922790
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  30922739 catacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 30922790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 42974472 - 42974517
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||    
T  42974472 tgtgtggggaccatatgaacacatgtcacaattgtatgtgggtgta 42974517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 638
Target Start/End: Complemental strand, 33496683 - 33496606
Alignment:
Q  561 taggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    ||||||||||||| ||| ||||||       |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  33496683 taggataatgtttcatgtacacacttttttccatacacacattataccactccatgtgagagtgtgtgagagacaata 33496606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 638
Target Start/End: Complemental strand, 48460802 - 48460759
Alignment:
Q  595 acacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  48460802 acacacattgtaccactccatgtgagagtgtgtgagagacaata 48460759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 38754926 - 38754977
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||| ||||| |||||| | |||||||||||||| |||||||||||||||    
T  38754926 catacatacattataccaccccatgtgagagtgtgtgagagacaataaatgt 38754977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 406
Target Start/End: Original strand, 520028 - 520215
Alignment:
Q  219 acattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaa 318  Q
    ||||||||||||||||||||||||||||||  ||| ||| ||||| |||   ||||||  ||||| ||||||||  ||    ||||  ||||||| |||     
T  520028 acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcctcgacaacaccattatttccgacaat 520127  T
Q  319 agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc 406  Q
    |  |||||||||  |||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||| |||||| ||||    
T  520128 aattcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc 520215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 646
Target Start/End: Complemental strand, 9046016 - 9045931
Alignment:
Q  561 taggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaag 646  Q
    ||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  9046016 taggataatgtttcatgtacacactttttttcatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgtaag 9045931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 14314015 - 14314066
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  14314015 catacacacattgtaccactttatgtgagagtgtgtgagagacaatacatgt 14314066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 34792680 - 34792731
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  34792680 catacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 34792731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 643
Target Start/End: Complemental strand, 13988433 - 13988349
Alignment:
Q  559 tttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  13988433 tttaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 13988349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 643
Target Start/End: Complemental strand, 11247375 - 11247294
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  11247375 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 11247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 643
Target Start/End: Complemental strand, 36890560 - 36890478
Alignment:
Q  561 taggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||| | |||||||||| ||||    
T  36890560 taggataatgtttcatgtacacacttttttccatacacacattgtaccactcgatgtgagagtgtatgagagacaatacatgt 36890478  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 643
Target Start/End: Complemental strand, 20151527 - 20151476
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||| ||||| |||||| | |||||||||||||| |||||||||||||||    
T  20151527 catacatacattataccaccccatgtgagagtgtgtgagagacaataaatgt 20151476  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 13696960 - 13697045
Alignment:
Q  558 ttttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||| ||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  13696960 tttttggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 13697045  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 643
Target Start/End: Complemental strand, 17823732 - 17823681
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  17823732 catacacacattgtaccactccatgtgagagtgtgtgagagacaatacatgt 17823681  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 643
Target Start/End: Original strand, 32599244 - 32599328
Alignment:
Q  559 tttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||||| | |||||||| ||||    
T  32599244 tttaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtgtgacagacaatacatgt 32599328  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 657 - 702
Target Start/End: Complemental strand, 33300067 - 33300022
Alignment:
Q  657 tgtgtgggaaccatatgaacacatgtcacaattgtatatgggtgta 702  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  33300067 tgtgtggggaccacatgaacacatgtcacaattgtatatgggtgta 33300022  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 14242519 - 14242604
Alignment:
Q  558 ttttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||||||| | |||| ||||| ||||    
T  14242519 ttttaggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagagtgtctgagaggcaatacatgt 14242604  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 410
Target Start/End: Original strand, 41195074 - 41195261
Alignment:
Q  223 tcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagat 322  Q
    ||||| |||||||||||||| |||||||| |  || ||||| |||   ||  ||| ||||||||||| ||| ||  | ||||  ||||||| ||| |  |    
T  41195074 tcttgtggattccaattccactcataaaaaaggcaagtttgaatagaaagtttactcaaactccacctccaagacatcaccattatttccgacaataatt 41195173  T
Q  323 catccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 410  Q
    |||| |||| |||||  ||||| || ||||| |  | ||| ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  41195174 catcaacatatttcaattcattccggaaaataatgtaatttctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa 41195261  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 646
Target Start/End: Complemental strand, 40095416 - 40095362
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaag 646  Q
    |||||| ||| |||||||||||||| |||||||||| |||||||||| |||||||    
T  40095416 catacatacactgtaccactctatgcgagagtgtgtgagagacaatacatgtaag 40095362  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 4434621 - 4434674
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgtaa 645  Q
    |||||||||||||||||||   |||||||| ||||| |||||||||||||||||    
T  4434621 catacacacattgtaccacctcatgtgagaatgtgtgagagacaataaatgtaa 4434674  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 643
Target Start/End: Original strand, 33555361 - 33555442
Alignment:
Q  562 aggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||||||||||| ||| ||||||       ||||||||||||||||||||| |||||||| ||||| | |||||||| ||||    
T  33555361 aggataatgtttcatgtacacacttttttccatacacacattgtaccactccatgtgagaatgtgtgacagacaatacatgt 33555442  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 36272656 - 36272741
Alignment:
Q  558 ttttaggataatgttttatgcacacacnnnnnnncatacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    |||| ||||||||||| ||| ||||||       |||| |||||||||||||||| |||||||||||||| | |||||||| ||||    
T  36272656 tttttggataatgtttcatgtacacacttttttccatatacacattgtaccactccatgtgagagtgtgtgaaagacaatacatgt 36272741  T

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Target: scaffold0533 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 10260 - 10311
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaataaatgt 643  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||| ||||    
T  10260 catacacacattgtaccactccatgtgagagtatgtgagagacaatacatgt 10311  T

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Target: scaffold0933 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 638
Target Start/End: Original strand, 3085 - 3131
Alignment:
Q  592 catacacacattgtaccactctatgtgagagtgtgtaagagacaata 638  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||    
T  3085 catacacacattgtaccactccatgtgagagtgtatgagagacaata 3131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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