View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11988_low_7 (Length: 361)
Name: NF11988_low_7
Description: NF11988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11988_low_7 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 2802427 - 2802766
Alignment:
| Q |
19 |
gatttactgaaaatgaatttagctataagttatttggctgaaaactaaaactatgtttaatgatttgttatcaatttgttcttgttgtaactgttcaata |
118 |
Q |
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| T |
2802427 |
gatttactgaaaatgaatttagctataagttatttggctgaaaactaaaactatgtttaatgatttgttatcaatttgttcttgttgtaactgttcaata |
2802526 |
T |
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| Q |
119 |
tgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagctgtggtgctgtgttacatgatattctaatg |
218 |
Q |
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| T |
2802527 |
tgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagttgtggtgctgtgttacatgatattctaatg |
2802626 |
T |
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| Q |
219 |
caacatcccttcatacaaattaagtataagctgaagcctgaacatctgtttctacatcttgatttcataaactgtttatcacacaaccagtatccactat |
318 |
Q |
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| T |
2802627 |
caacatcccttcatacaaattaagtataagttaatgc---aacatctgtttctacatcttgatttcataaactgtttatcacacaaccagtatccactat |
2802723 |
T |
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| Q |
319 |
ccagtatccatatgttgaaaagatgtacctttcgtatagcacc |
361 |
Q |
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| T |
2802724 |
ccagtatccatatgttgaaaagatgtacctttcgtatagcacc |
2802766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 1659189 - 1659000
Alignment:
| Q |
19 |
gatttactgaaaatgaatttagctataagttatttggctgaaaactaaaactatgtttaatgatttgttatcaatttgttcttgttgtaact--gttcaa |
116 |
Q |
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| T |
1659189 |
gatttactgaaaatgaatttagctataagtcatttggctgaaaactaaaactatgtttaatgatttgttataaatttgttcttgttgtaactatgttcaa |
1659090 |
T |
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| Q |
117 |
tatgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagctgtggtgctgtgttacat |
206 |
Q |
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| T |
1659089 |
tatgtgtattctatgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatagttgtggtgctgtgttacat |
1659000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 1679692 - 1679643
Alignment:
| Q |
261 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
310 |
Q |
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| T |
1679692 |
catctgtttctacatctagatttcattaactgtttatatcacaaccagta |
1679643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 2801036 - 2801085
Alignment:
| Q |
261 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
310 |
Q |
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| T |
2801036 |
catctgtttctacatctagatttcattaactgtttatgtcacaaccagta |
2801085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 1679847 - 1679790
Alignment:
| Q |
130 |
tgctcaattgtgtaaatgaatgacacggataatagtttaaatcaatttctgatgatag |
187 |
Q |
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| T |
1679847 |
tgctaaattgtataagtaaatgacatggataataatttaaatcaatttctaatgatag |
1679790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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