View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11989_high_1 (Length: 499)
Name: NF11989_high_1
Description: NF11989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11989_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 29 - 467
Target Start/End: Original strand, 8457896 - 8458334
Alignment:
| Q |
29 |
tctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaa |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457896 |
tctttttcattttacactcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggattgatggcactggacagctttcaa |
8457995 |
T |
|
| Q |
129 |
ctgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatc |
228 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457996 |
ctgcatttgacttcacaacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatc |
8458095 |
T |
|
| Q |
229 |
ttacccttttttgctagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgtta |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8458096 |
ttacccttttttgctagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgtta |
8458195 |
T |
|
| Q |
329 |
ccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458196 |
ccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtc |
8458295 |
T |
|
| Q |
429 |
acatttgtagataatcatgatactggctcaacacaggtt |
467 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
8458296 |
acatttgtagataatcatgatactggctcaactcaggtt |
8458334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 6827444 - 6827278
Alignment:
| Q |
29 |
tctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaa |
128 |
Q |
| |
|
|||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
6827444 |
tcttttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaa |
6827345 |
T |
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| Q |
129 |
ctgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
195 |
Q |
| |
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||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6827344 |
ctggatttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
6827278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 6827279 - 6827150
Alignment:
| Q |
297 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
395 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
|
| Q |
396 |
ggtgtgattggatggtggccttcaagatca |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
6827179 |
ggtgtgattggatggtggccttcaagatca |
6827150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 9822700 - 9822866
Alignment:
| Q |
29 |
tctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaa |
128 |
Q |
| |
|
|||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
9822700 |
tcttttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaa |
9822799 |
T |
|
| Q |
129 |
ctgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
195 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9822800 |
ctggatttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
9822866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 297 - 425
Target Start/End: Original strand, 9822865 - 9822994
Alignment:
| Q |
297 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
395 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
|
| Q |
396 |
ggtgtgattggatggtggccttcaagatca |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
9822965 |
ggtgtgattggatggtggccttcaagatca |
9822994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 302 - 433
Target Start/End: Complemental strand, 25802704 - 25802572
Alignment:
| Q |
302 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
400 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
|
| Q |
401 |
gattggatggtggccttcaagatcagtcacatt |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25802604 |
gattggatggtggccttcaagatcagtcacatt |
25802572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
309 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
407 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
|
| Q |
408 |
tggtggccttcaagatcag |
426 |
Q |
| |
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||||||||||||||||||| |
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| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 18361345 - 18361265
Alignment:
| Q |
116 |
ggacagctttcaactgcatttgacttcacaacaaagggaat--tctccaggtacccaacattttgtcctaagtatgttaaa |
194 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | |||||||| |||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
18361345 |
ggacaactttcaactgcatatgacttcacagccaagggaatgatctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
346 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
425 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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