View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11989_high_2 (Length: 499)
Name: NF11989_high_2
Description: NF11989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11989_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 73 - 471
Target Start/End: Complemental strand, 32707096 - 32706698
Alignment:
| Q |
73 |
atatcaatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
172 |
Q |
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| T |
32707096 |
atatcaatcattatattgtgcagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
32706997 |
T |
|
| Q |
173 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706996 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatc |
32706897 |
T |
|
| Q |
273 |
tgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcgttacctgaaatcgacgca |
372 |
Q |
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| T |
32706896 |
tgggatatttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcgttagctgaaatcgacgca |
32706797 |
T |
|
| Q |
373 |
ttctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
471 |
Q |
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| T |
32706796 |
ttctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
32706698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
395 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
447 |
Q |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 3001966 - 3001615
Alignment:
| Q |
1 |
aaactgcagcaattaccgtttatgcaacctttaaatagtattactatcccatttagtacaatatatcattagatatcaatcattatattgtacagcagca |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||| |
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| T |
3001966 |
aaactgcagcaattaccatttatgcaacctttaaatagtattactatcccatttagtataatatatcattacata-caatcattatattgtgcagcagca |
3001868 |
T |
|
| Q |
101 |
gatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggca-caatttagacattgcacaaaaaactgcagtag |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
3001867 |
gatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatttccgtagtggcaacaatttagacattgcacaaaaaactgcagtag |
3001768 |
T |
|
| Q |
200 |
cttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgggatatttggaagtgaaattgatgc |
299 |
Q |
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||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3001767 |
cttacgtattgagcatcttgaaagcagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatgtgggatatttggaagtgaaattgatgc |
3001668 |
T |
|
| Q |
300 |
tccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
352 |
Q |
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| T |
3001667 |
accacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
371 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
445 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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