View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11989_low_1 (Length: 754)
Name: NF11989_low_1
Description: NF11989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11989_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 752
Target Start/End: Complemental strand, 12366349 - 12365597
Alignment:
| Q |
19 |
atttctgaggcgcgtgtagagcatacttgcatctctatagagggccttatgatatgaacataataacttagagctctcagatagaagagagaaatttaga |
118 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |
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| T |
12366349 |
atttctaaggcgagtgtagagcatacttgcatctctatagagggacttatgatatgaacataataacttagagctttcagaaagaagagagaaagttaga |
12366250 |
T |
|
| Q |
119 |
agaacacgtttttcataaaacacacttggactaatttcat------------aaatatgttacaactcttctccttttatagccaaggagatacattaag |
206 |
Q |
| |
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|||||| ||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12366249 |
agaacatgtttttcataaaacacactaggatttatttcattcaagttgtgtgaaatatgttacaactcttctccttttatagccaaggagatacattaag |
12366150 |
T |
|
| Q |
207 |
tacaaaaataaaactattcactcacatgccactaaaacactattcgcatgcattataataat--------ggaaaacacttttatgacacttttgaccaa |
298 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
12366149 |
gacaaaaataaaactattcactcacatgc-actaaaacactattgacatgcattataataattttataatggaaaacactgttatgacacttttgaccaa |
12366051 |
T |
|
| Q |
299 |
aatatcacattatttttcacacttagtagtaaaaacaaaaacataactattcatgcacattgctattatgcaagacacgtttttgacacctatgccatct |
398 |
Q |
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||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
12366050 |
aatgtcacattattttgcacacttagtagtaaaaacaaaaatataactattcatgcacattgctattatgcaagacacgttattgacacacatgccatct |
12365951 |
T |
|
| Q |
399 |
tggaaatgacttattggactcttatatgacatattagtctttgaagataggctcgtgacttgaggacgggtttggatcagacgaagagtagtagcagttc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
12365950 |
tggaaatgacttattggactcttatatgacatattagtctttgaagatagactcgtgacttggggacatgtttggatcagacgaagagtagtagcagtcc |
12365851 |
T |
|
| Q |
499 |
tctaagaagtagctcctagactggcgtgactcatactgccagctgtcccctattagttactttacggtctcttcatcaagattctcggaaggctcaatat |
598 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||| |
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| T |
12365850 |
tctgagaagtagctcctagactggcatgactcatactgccagctgtccgctattagttgctttatggtctcttcatcaagattctctaaaggctcaatat |
12365751 |
T |
|
| Q |
599 |
ccattagattttcttcaaaattcatttgtgtgaactattgttcaatattttcctaaaattcttgttctggttgagatgcctatctggagctttccccaaa |
698 |
Q |
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|| || |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |
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| T |
12365750 |
ccgttggattttcttcaaaattcatttgtgtgaactgttgttcaatattttcctgaaagtcttgttctggttgagatgcctgtctagagctttccccaat |
12365651 |
T |
|
| Q |
699 |
ttcttgaggattgactgatttgaattgcggaggaagattcccatgtcttataca |
752 |
Q |
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|
| T |
12365650 |
ttcttgaggattgactggtttgaattgcggtggaagattcccatgacttataca |
12365597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 12346128 - 12346074
Alignment:
| Q |
19 |
atttctgaggcgcgtgtagagcatacttgcatctctatagagggccttatgatat |
73 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12346128 |
atttctgaggcgagtgtagagcatacttgcatctctatagagggacttatgatat |
12346074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 9e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 67 - 394
Target Start/End: Original strand, 19965441 - 19965782
Alignment:
| Q |
67 |
atgatatgaacataataacttagagctctcagatagaagagagaaatttagaagaacacgtttttcataaaacacacttggacta-atttcat------- |
158 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||| | ||||||||| ||| | |||| || |
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| T |
19965441 |
atgatatgatcataataacttagagctttcagaaataagagagaaatttagaagaacatgtttttcttgaaacacactaggattttatttgattcaagtt |
19965540 |
T |
|
| Q |
159 |
-----aaatatgttacaactcttctccttttatagccaaggagatacattaagtacaaaaataaaactattcactcacatgccact-aaaacactattcg |
252 |
Q |
| |
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||| ||||||||| |||||||||||||||||||| ||| |||| ||| ||||| ||| |||||||||||| ||||||||| ||||||||||| | |
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| T |
19965541 |
gtgagaaagatgttacaattcttctccttttatagccaatgaggtacactaaagacaaagatagaactattcactcgcatgccactgaaaacactattgg |
19965640 |
T |
|
| Q |
253 |
catgcattataataatggaaaacacttttatgacacttttgaccaaaatatcacattatttttcacacttagtagtaaaaacaaaaacataactattcat |
352 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||||||| ||||| |||||||||||| |||||||| || |||||||||| | | ||||| || | |
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| T |
19965641 |
catgcattataactatggaagacatttttatgacacttttgactaaaatgtcacattattttgcacacttaatactaaaaacaaatatacaactaatcgt |
19965740 |
T |
|
| Q |
353 |
gcacattgctattatgcaagacacgtttttgacacctatgcc |
394 |
Q |
| |
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| T |
19965741 |
acatattgctattatgcaagacacgtttttgacacctatgcc |
19965782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 314
Target Start/End: Complemental strand, 658005 - 657851
Alignment:
| Q |
161 |
atatgttacaactcttctccttttatagccaaggagatacattaagtacaaaaataaaactattcactcacatgccacta-aaacactattcgcatgcat |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||| | ||| | | |||||| ||| |||||| ||||| ||||| |||| | || | |
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| T |
658005 |
atatgttacaactcttctccttttatagccaatgagatacactaaagataaagacacaactatccacacacatgtcactataaacattattgaaaagctt |
657906 |
T |
|
| Q |
260 |
tataataatggaaaacacttttatgacacttttgaccaaaatatcacattatttt |
314 |
Q |
| |
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|| ||| |||||| ||| |||||||||||||||| || || |||||||||||| |
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| T |
657905 |
tacaattatggaagacatacttatgacacttttgactaacatgtcacattatttt |
657851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 6455875 - 6455808
Alignment:
| Q |
256 |
gcattataataatggaaaacacttttatgacacttttgaccaaaatatcacattatttttcacactta |
323 |
Q |
| |
|
|||||||||| |||||| ||| |||||| ||||||||||| ||||| |||||||||||| || ||||| |
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|
| T |
6455875 |
gcattataattatggaagacatttttataacacttttgactaaaatgtcacattattttgcatactta |
6455808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 6455647 - 6455599
Alignment:
| Q |
344 |
actattcatgcacattgctattatgcaagacacgtttttgacacctatg |
392 |
Q |
| |
|
|||||| || ||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
6455647 |
actatttatacacattgttattatgaaagacacgtttttgacacctatg |
6455599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 12470343 - 12470439
Alignment:
| Q |
20 |
tttctgaggcgcgtgtagagcatacttgcatctctatagagggccttatgatatgaacataataacttagagctctcagatagaagagagaaatttag |
117 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| | | || |||||||||| ||||| ||||| | ||||| | ||||||||||||||| |
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|
| T |
12470343 |
tttctgaggcgagtgtagagcgtacttgcatctctatagttgaattaataatatgaacatcataac-tagagttttcagacataagagagaaatttag |
12470439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 18904862 - 18904820
Alignment:
| Q |
19 |
atttctgaggcgcgtgtagagcatacttgcatctctatagagg |
61 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
18904862 |
atttatgaggcgagtgtagagcatacttgcatctatatagagg |
18904820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 4695279 - 4695385
Alignment:
| Q |
24 |
tgaggcgcgtgtagagcatacttgcatctctatagagggccttatgatatgaacataataacttagagctctcagatagaagagagaaatttagaagaac |
123 |
Q |
| |
|
||||||| |||| |||| | |||| ||||||||||||| | |||| |||| |||||||||| |||||| | | | |||||| |||||||||||||||| |
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| T |
4695279 |
tgaggcgagtgttgagcgtccttgtatctctatagaggaattaatgacatgaccataataact-agagcttttaaaaagaagatagaaatttagaagaac |
4695377 |
T |
|
| Q |
124 |
acgttttt |
131 |
Q |
| |
|
| |||||| |
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|
| T |
4695378 |
atgttttt |
4695385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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