View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_high_14 (Length: 266)
Name: NF11990_high_14
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 13511150 - 13511339
Alignment:
| Q |
61 |
cactgaattttaataattcaattgatgagaaattctatttacgaacccgaacctttagttctaccgaagacatcaaatgttctaaaaaccaccttgttct |
160 |
Q |
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| T |
13511150 |
cactgaattttaataattcaattgatgagaaattctgtttacgaacccgaaccttaagttctaccgaagacatcagatgttctaaaaaccaccttgttct |
13511249 |
T |
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| Q |
161 |
gtaaagc--aaaaaataatattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggagaataaactgagacgtt |
248 |
Q |
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| T |
13511250 |
gtaaagcaaaaaaaataaaattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggggaataaactgagacgtt |
13511339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 13600681 - 13600870
Alignment:
| Q |
61 |
cactgaattttaataattcaattgatgagaaattctatttacgaacccgaacctttagttctaccgaagacatcaaatgttctaaaaaccaccttgttct |
160 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13600681 |
cactgaattttaataattcaattgatgagaaattctgtttacgaacccgaaccttaagttctaccgaagacatcagatgttctaaaaaccaccttgttct |
13600780 |
T |
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| Q |
161 |
gtaaagc--aaaaaataatattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggagaataaactgagacgtt |
248 |
Q |
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| T |
13600781 |
gtaaagcaaaaaaaataaaattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggggaataaactgagacgtt |
13600870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 17585268 - 17585157
Alignment:
| Q |
137 |
atgttctaaaaaccaccttgttctgtaaagcaaaaa-ataatattaataacataatttgaaggaaacaccataagagaattgtaaaggaaattggagaat |
235 |
Q |
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|||||||||||| |||| ||||||| | |||||||| | || ||||| ||||| ||||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
17585268 |
atgttctaaaaagcaccatgttctggatagcaaaaagaaaaaattaacaacatgatttgaaggaaacacaataagagaactagaaaggaaattggagaat |
17585169 |
T |
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| Q |
236 |
aaactgagacgt |
247 |
Q |
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|||||||||||| |
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| T |
17585168 |
aaactgagacgt |
17585157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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