View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_high_17 (Length: 250)
Name: NF11990_high_17
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_high_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 22863059 - 22862821
Alignment:
| Q |
11 |
caaagggaaagaaaaaacgattgaggatggttacaagaagtgtgatggttatatagaagatttcaataaaggagagctaaaacttgcacctggttgtgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22863059 |
caaagggaaagaaaaaacgattgaggatggttacaagaagtgtgatggttatatagaagatttcaataaaggagagctaaaactcgcacctggttgtgat |
22862960 |
T |
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| Q |
111 |
gctgctcagacattagagtctgagatatttagcacattaaatggtttacgtgatacaacagcgaaggtatccannnnnnnnnccttcataaagtatgctg |
210 |
Q |
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| T |
22862959 |
gctgctcagacattagagtctaagatatttagtacattaaatggcttgcgtgatacaacagcgaaggtatccattttttttt-cttcataaagtatgctg |
22862861 |
T |
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| Q |
211 |
cctttgtattttgacatgttggccaccgagtgctagtggc |
250 |
Q |
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| T |
22862860 |
cctttgtattttgacatgttggccaccgagtgctagtggc |
22862821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 22833279 - 22833111
Alignment:
| Q |
11 |
caaagggaaagaaaaaacgattgaggatggttacaagaagtgtgatggttatatagaagatttcaataaaggagagctaaaacttgcacctggttgtgat |
110 |
Q |
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||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||| |||||||| ||| ||||| |||| ||||||||||||| |
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| T |
22833279 |
caaagggaaagaagaaacgatcgatgatggttacaagaagtgtgatggttttatagaagctttcaatagtggaaagctagaactcttacctggttgtgat |
22833180 |
T |
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| Q |
111 |
gctgctcagacattagagtctgagatatttagcacattaaatggtttacgtgatacaacagcgaaggta |
179 |
Q |
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| T |
22833179 |
gctgctcagacattagagtctaagatatttggtacattaaatggcttacgtgatacaacagggaaggta |
22833111 |
T |
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