View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_high_2 (Length: 653)
Name: NF11990_high_2
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Original strand, 42788869 - 42789485
Alignment:
| Q |
17 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788869 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
42788968 |
T |
|
| Q |
117 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788969 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttcc |
42789068 |
T |
|
| Q |
217 |
ctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42789069 |
ctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattc |
42789168 |
T |
|
| Q |
317 |
ttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatgtgaac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42789169 |
ttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaac |
42789268 |
T |
|
| Q |
417 |
tctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagata |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42789269 |
tctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagata |
42789368 |
T |
|
| Q |
517 |
aggtggatgttcttttttgtcacagagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgaagggtttgtgatcagcactc |
616 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42789369 |
aggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtttgtgatcagcactc |
42789468 |
T |
|
| Q |
617 |
cactcactttcatgttc |
633 |
Q |
| |
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||||||||||||||||| |
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| T |
42789469 |
cactcactttcatgttc |
42789485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Original strand, 42798407 - 42799023
Alignment:
| Q |
17 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42798407 |
aagaacaccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaa |
42798506 |
T |
|
| Q |
117 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42798507 |
attcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttcaatctttcc |
42798606 |
T |
|
| Q |
217 |
ctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaactcgacattc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
42798607 |
ctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaactcgacattc |
42798706 |
T |
|
| Q |
317 |
ttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatgtgaac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42798707 |
ttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatgtgaac |
42798806 |
T |
|
| Q |
417 |
tctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagata |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42798807 |
tctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctgagata |
42798906 |
T |
|
| Q |
517 |
aggtggatgttcttttttgtcacagagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgaagggtttgtgatcagcactc |
616 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42798907 |
aggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagggtttgtgatcagcactc |
42799006 |
T |
|
| Q |
617 |
cactcactttcatgttc |
633 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
42799007 |
cactcactttcatgttc |
42799023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 108 - 530
Target Start/End: Original strand, 34566633 - 34567055
Alignment:
| Q |
108 |
tggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatctcttcttc |
207 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| | |
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|
| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatcttttcctt |
34566732 |
T |
|
| Q |
208 |
aatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaac |
307 |
Q |
| |
|
|||||||| ||||| | || || || || ||||| || ||| ||||| | ||| || |||| || ||||||||||||||||| |||||||||| |
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| T |
34566733 |
aatctttctctattgaccttgatgtaattatcagtgaaactttcatctgacaacattgatgctaaaagatgttgtgtttgtgaagatattaaggtaaaac |
34566832 |
T |
|
| Q |
308 |
tcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaac |
407 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
34566833 |
tcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaac |
34566932 |
T |
|
| Q |
408 |
aatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcg |
507 |
Q |
| |
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||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| ||| || ||||| || |||||||||||| |
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| T |
34566933 |
aatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcg |
34567032 |
T |
|
| Q |
508 |
tctgagataaggtggatgttctt |
530 |
Q |
| |
|
||||||| |||||| |||||||| |
|
|
| T |
34567033 |
tctgagacaaggtgtatgttctt |
34567055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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