View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_high_3 (Length: 553)
Name: NF11990_high_3
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_high_3 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 15 - 553
Target Start/End: Complemental strand, 11860959 - 11860418
Alignment:
| Q |
15 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagac |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
11860959 |
gagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaatttaccaaggaattgaagtgaagcgagccaattagac |
11860860 |
T |
|
| Q |
115 |
aacatgtggccatggtacccgacgactaatagcactttcagattctgatgtggctcgagaaaatccataaatttattatcgatgacgacatcgctttctt |
214 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||| |||||||| |
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| T |
11860859 |
aacatgtggccatggtacccgacaactaatagctctttcagattctgatgtggctcgagacaatcgataaatttattatcaatgtcgacattgctttctt |
11860760 |
T |
|
| Q |
215 |
cctcctcgt---gatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgac |
311 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
11860759 |
cctcctcgtcatgatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgac |
11860660 |
T |
|
| Q |
312 |
ttgttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagt |
411 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11860659 |
ttgttcaagatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaaagt |
11860560 |
T |
|
| Q |
412 |
gacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcat |
511 |
Q |
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|||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
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| T |
11860559 |
gacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgt |
11860460 |
T |
|
| Q |
512 |
ccatgtcttttggcaattccttgaggacatgacattgagaca |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11860459 |
ccatgtcttttggcaattccttgaggacatgacattgagaca |
11860418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 553
Target Start/End: Complemental strand, 11828827 - 11828283
Alignment:
| Q |
15 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagac |
114 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
11828827 |
gagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattcaaggtaaacttaacaaggcattgaagtgaagcgagccagttagac |
11828728 |
T |
|
| Q |
115 |
aacatgtggccatggtacccgacgactaatagcactttcagattctgatgtggctcgagaaaatccataaatttattatcgatgacgacatcgctttctt |
214 |
Q |
| |
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|| |||| || | ||||||||| ||||||||||||| |||||| ||||||||| |||| |||| | |||| || || | |||||| |||||||| |
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| T |
11828727 |
aatgtgtgaccgttgtacccgacaactaatagcacttgcagatttggatgtggctggagacaatcaagcgatttcttgtctttctcgacattgctttctt |
11828628 |
T |
|
| Q |
215 |
cctcctc------gtgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaactt |
308 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
11828627 |
cgtcctcctcatcgtgatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaactt |
11828528 |
T |
|
| Q |
309 |
gacttgttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaa |
408 |
Q |
| |
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|| |||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11828527 |
gatttgttccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggctacgaaa |
11828428 |
T |
|
| Q |
409 |
agtgacaatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaat |
508 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
11828427 |
agtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaat |
11828328 |
T |
|
| Q |
509 |
catccatgtcttttggcaattccttgaggacatgacattgagaca |
553 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
11828327 |
catccatgtcttttggcaattctttgaggacatgacatcgagaca |
11828283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 214 - 551
Target Start/End: Complemental strand, 12039522 - 12039185
Alignment:
| Q |
214 |
tcctcctcgtgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgactt |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | || | || ||| |||||||||||||||||||| ||| |||||| ||| | ||||||||||||| |
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|
| T |
12039522 |
tcctcctcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgactt |
12039423 |
T |
|
| Q |
314 |
gttcaagatgagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtgacttgtttcttgctggcaacgaaaagtga |
413 |
Q |
| |
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|||| ||||| || ||||||| ||| |||||||||||||| ||||| |||||| |||||||||||| || || | ||||||||| || || || ||||| |
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| T |
12039422 |
gttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaacgtatttcttgctagctacaaagagtga |
12039323 |
T |
|
| Q |
414 |
caatgtttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatcc |
513 |
Q |
| |
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||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12039322 |
caatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatcc |
12039223 |
T |
|
| Q |
514 |
atgtcttttggcaattccttgaggacatgacattgaga |
551 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |
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| T |
12039222 |
atgtcttttggcaattccttgagaaaatgacattgaga |
12039185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 223 - 548
Target Start/End: Original strand, 11901806 - 11902134
Alignment:
| Q |
223 |
tgatcccatcttagagtcaagaactcgagatgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagat |
322 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||| |||| |
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|
| T |
11901806 |
tgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttctagat |
11901905 |
T |
|
| Q |
323 |
gagatatttccaagtggcctctcagtttgttaagatctgtgagtgatcttagtcctcccgtg---acttgtttcttgctggcaacgaaaagtgacaatgt |
419 |
Q |
| |
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| ||||||||||| |||||||||| ||||||||||| |||||| |||||||||||| ||| ||||||||||||||||| || || ||||||||||| |
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| T |
11901906 |
gcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgacaatgt |
11902005 |
T |
|
| Q |
420 |
ttgcaaggaagtgagcttacttatcccacttggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtct |
519 |
Q |
| |
|
||| || |||||||||||| |||| ||||||||||| ||||||||||||| ||| ||||| | ||||||||||||||||||||||| |||||| |||| |
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|
| T |
11902006 |
ttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtct |
11902105 |
T |
|
| Q |
520 |
tttggcaattccttgaggacatgacattg |
548 |
Q |
| |
|
||||||||||||||||||| |||||||| |
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| T |
11902106 |
tttggcaattccttgaggatgtgacattg |
11902134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 253 - 545
Target Start/End: Complemental strand, 11732366 - 11732071
Alignment:
| Q |
253 |
tgttgtttatttttcaaaaattcatctttggcagcttcctttgatggagagaacttgacttgttcaagatgagatatttccaagtggcctctcagtttgt |
352 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||| || |||||||||||||||||||| || ||||| | ||||||| | | | | || |||| |
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|
| T |
11732366 |
tgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttgacttgctccagatgcaaaatttccagtttgtccttgaggttgt |
11732267 |
T |
|
| Q |
353 |
taagatctgtgagtgatcttagtcctcccgtgact---tgtttcttgctggcaacgaaaagtgacaatgtttgcaaggaagtgagcttacttatcccact |
449 |
Q |
| |
|
| |||| ||||||| ||||||||||| ||| | |||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||| | |
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|
| T |
11732266 |
tgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggt |
11732167 |
T |
|
| Q |
450 |
tggcatttgagttagatccaagcacccctctaagtcaagatggttgaggcaactcaaatcatccatgtcttttggcaattccttgaggacatgaca |
545 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| | || ||||||| |||||| | ||| ||| | || |||||||||||||||||||||||||||||| |
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|
| T |
11732166 |
tggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgaca |
11732071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 11901574 - 11901645
Alignment:
| Q |
15 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaag |
86 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11901574 |
gagatgtggaagctgatccattggggggagaaactcgcatttgggacagtcgttcaaggtaaacttaacaag |
11901645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 11732625 - 11732512
Alignment:
| Q |
21 |
tggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagtgagccaattagacaacatg |
120 |
Q |
| |
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|||||| ||||| ||||| || ||||||||||| || |||||||| |||||||||||||||||||| ||||||| ||| |||||| ||||| || || |
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| T |
11732625 |
tggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggcattgaagcgaatcgagccatttagataaggtg |
11732526 |
T |
|
| Q |
121 |
tggccatggtaccc |
134 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
11732525 |
cggccattgtaccc |
11732512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 12039727 - 12039643
Alignment:
| Q |
15 |
gagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaa |
99 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||| ||| || || ||||| |||||||||||||||||||| | ||||||||| |
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| T |
12039727 |
gagatgtggaagctcatccattggcgggagaaattcgcattttgggcagtcattcaaggtaaacttaacaagacaatgaagtgaa |
12039643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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