View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_high_4 (Length: 529)
Name: NF11990_high_4
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 214 - 519
Target Start/End: Original strand, 28470814 - 28471120
Alignment:
| Q |
214 |
aggtaagaaaaagttttttacaattactcactcaaattacaaaccatgaagatgttcatgcttgcatagtcatgacaatagcattaaaatcctattttcc |
313 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28470814 |
aggtaagaaaaagttttttacaattattcactcaaattacaaaccatgaagatgttcatgcttgcatagtcatgacaatagcattaaaatcctattttcc |
28470913 |
T |
|
| Q |
314 |
aaaatagaaaacaaaacaaaatccattctactagatatttgttctgtaaacaatgcttcaaacacaaaaa-ccagatacaatttctcaaacattagacct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28470914 |
aaaatagaaaacaaaacaaaatccattctactagatatttgttctgtaaacaatgcttcaaacacaaaaacccagatacaatttctcaaacattagacct |
28471013 |
T |
|
| Q |
413 |
ttgatgcaattcatgagtattccaccattgatgaacaaatacaccattgcttctaagatccttgtaaatatccatgcatctctctctttcaccatcttca |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471014 |
ttgatgcaattcatgagtattccaccattgatgaacaaagacaccattgcttctaagacccttgtaaatatccatgcatctctctctttcaccatcttca |
28471113 |
T |
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| Q |
513 |
ctctctg |
519 |
Q |
| |
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||||||| |
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| T |
28471114 |
ctctctg |
28471120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 28470576 - 28470691
Alignment:
| Q |
18 |
tgagaccgcggtcagattgcttctaaagcgcatccaaccataagttatgattcgtagcttcaccattttctcgtccaaagtagcattgaaacgcaagaaa |
117 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28470576 |
tgagaccgcggtcatattgcttctaacgcgcatccaaccataagttatgattcgtagcttcaccattttctcgtccaaagcagcattgaaacgcaagaaa |
28470675 |
T |
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| Q |
118 |
gacaattcaagtgcac |
133 |
Q |
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|||||||| ||||||| |
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| T |
28470676 |
gacaattcgagtgcac |
28470691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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