View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11990_high_5 (Length: 486)

Name: NF11990_high_5
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11990_high_5
NF11990_high_5
[»] chr7 (6 HSPs)
chr7 (154-332)||(47118313-47118491)
chr7 (21-89)||(47118555-47118623)
chr7 (200-279)||(29366607-29366686)
chr7 (185-279)||(36742208-36742302)
chr7 (200-277)||(37327293-37327370)
chr7 (348-377)||(47118268-47118297)
[»] chr1 (4 HSPs)
chr1 (187-274)||(15061449-15061536)
chr1 (195-277)||(42508251-42508333)
chr1 (187-279)||(43344793-43344885)
chr1 (210-274)||(43670696-43670760)
[»] chr3 (7 HSPs)
chr3 (200-278)||(38216338-38216416)
chr3 (200-279)||(39450614-39450693)
chr3 (210-274)||(14741939-14742003)
chr3 (195-274)||(25189648-25189727)
chr3 (195-274)||(38018458-38018537)
chr3 (187-227)||(864372-864412)
chr3 (195-275)||(49726401-49726481)
[»] chr4 (5 HSPs)
chr4 (195-279)||(18879339-18879423)
chr4 (195-270)||(12499018-12499093)
chr4 (242-279)||(44362906-44362943)
chr4 (36-79)||(30017563-30017607)
chr4 (195-279)||(44363374-44363458)
[»] chr5 (1 HSPs)
chr5 (200-278)||(14626197-14626275)
[»] chr2 (4 HSPs)
chr2 (36-84)||(12619665-12619713)
chr2 (200-274)||(35020972-35021046)
chr2 (200-274)||(40609913-40609987)
chr2 (186-277)||(1602637-1602727)
[»] chr8 (4 HSPs)
chr8 (200-279)||(36632890-36632968)
chr8 (195-274)||(3207618-3207697)
chr8 (200-279)||(20771681-20771760)
chr8 (200-279)||(20781475-20781554)
[»] scaffold0157 (1 HSPs)
scaffold0157 (195-270)||(21384-21459)
[»] chr6 (1 HSPs)
chr6 (195-274)||(28587615-28587694)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 47118491 - 47118313
Alignment:
154 cacgtcatttcaccatattttttatcaacttgttgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatat 253  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
47118491 cacgtcatttcaccatattttttatcaactagttgatgaatggacaaaaaccgtcaatttttaaaatagaaggatcaattatgtagattggtgaaaatat 47118392  T
254 ggggaccaaaactgcaattaaacctagtttatatgatatgtactatattattgtagttattgaaaaaatatagttatga 332  Q
    |||||| ||||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
47118391 ggggactaaaactgcaattaagtctaatttatatgatatgtactatattattgttgttattgaaaaaatatagttatga 47118313  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 47118623 - 47118555
Alignment:
21 tcgatcgtattttacaactaaaaatttataatttgatatgttttaaatgacgtgatatatgatctcgtg 89  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
47118623 tcgatcgtattttagaactaaaaatttgtaatttgatatgttttaaataacgtgatatatgatctcgtg 47118555  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 29366607 - 29366686
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    |||| |||||||| |||||||||| | ||||||| || | |||| ||||||||  |||||||||||||||||||| ||||    
29366607 aaaattgtcaaatattaaaatagaggaatcaattttgcaaattgatgaaaatagagggaccaaaactgcaattaagccta 29366686  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 36742208 - 36742302
Alignment:
185 gttgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    ||||||||| |||| |||||||| ||||||||||||| | ||| ||||| || | |||| |||||||| |||||  |||| | ||||||| ||||    
36742208 gttgatgaaaggaccaaaactgttaaattttaaaatatagggaccaattttgcaaattgatgaaaatagggggattaaaattacaattaagccta 36742302  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 37327370 - 37327293
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacc 277  Q
    |||| |||| |||||||||||||  ||| || || || | | ||||||||||| ||||| ||||||||||||||||||    
37327370 aaaattgtcgaattttaaaatagggggaccatttctgcaaaatggtgaaaatagggggatcaaaactgcaattaaacc 37327293  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 377
Target Start/End: Complemental strand, 47118297 - 47118268
Alignment:
348 ataatttgaaagtcacaattatctatactt 377  Q
    ||||||||||||||||||||||||||||||    
47118297 ataatttgaaagtcacaattatctatactt 47118268  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 15061536 - 15061449
Alignment:
187 tgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||| |  | | || ||||||||||| || |||||||||||||||    
15061536 tgatgaatggaccaaaactgtcaaattttaaaataggaggatcaattctacaaaatgatgaaaatatggagatcaaaactgcaattaa 15061449  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 42508333 - 42508251
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacc 277  Q
    |||| ||||||||| |||||||||||||  ||| || || |||| | ||||||||||| | ||||||||||||||||||||||    
42508333 ggaccaaaactgtcgaattttaaaatagggggaccatttctgtaaaatggtgaaaataggaggaccaaaactgcaattaaacc 42508251  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 43344885 - 43344793
Alignment:
187 tgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    ||||||| |||| ||| ||||| |||||||||||||  ||| ||||| || | | |  ||||||||||| |||||||| ||||||||| ||||    
43344885 tgatgaagggaccaaacctgtcgaattttaaaatagggggaccaattctgcaaaataatgaaaatatggagaccaaaattgcaattaagccta 43344793  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 43670760 - 43670696
Alignment:
210 aattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    ||||||||||||| |||| ||||| || | |   ||||||||| |||||||||||||||||||||    
43670760 aattttaaaataggaggaccaattttgcaaaagagtgaaaatagggggaccaaaactgcaattaa 43670696  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 38216338 - 38216416
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacct 278  Q
    |||| |||| |||||||||||||  ||| |||||||| | | ||||||||||| |||||||||||||||||||||||||    
38216338 aaaagtgtcgaattttaaaatagggggaccaattatgcaaaatggtgaaaatagggggaccaaaactgcaattaaacct 38216416  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 39450693 - 39450614
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    |||||||||||||||||||||||  ||| ||||| || | | ||||||||||| |||||| |||||||||||||| ||||    
39450693 aaaactgtcaaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggacaaaaactgcaattaagccta 39450614  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 14742003 - 14741939
Alignment:
210 aattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    ||||||||| |||| ||| ||||| || | | ||||||||||| |||||||||||||||||||||    
14742003 aattttaaattagagggaccaattttgcaaagtggtgaaaatagggggaccaaaactgcaattaa 14741939  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 25189648 - 25189727
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    |||| ||||||||  |||||||||||||  ||| ||||| || | | |||| |||||| |||||||||||||||||||||    
25189648 ggaccaaaactgttgaattttaaaatagggggaccaattctgcaaaatggtaaaaatagggggaccaaaactgcaattaa 25189727  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 38018458 - 38018537
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    |||| |||| |||||||||||||||||||  || ||||| | || | ||  ||||||| |||||||||||||||||||||    
38018458 ggaccaaaattgtcaaattttaaaatagagagaccaattctataaaatgaagaaaatagggggaccaaaactgcaattaa 38018537  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 864412 - 864372
Alignment:
187 tgatgaatggacaaaaactgtcaaattttaaaatagaagga 227  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
864412 tgatgaaaggatgaaaactgtcaaattttaaaatagaagga 864372  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 49726481 - 49726401
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaa 275  Q
    |||| ||||||||||||||||||||||| |  ||||||| | || | || ||||||||  |||| |||||||| |||||||    
49726481 ggaccaaaactgtcaaattttaaaataggaaaatcaattctataaaatgatgaaaataaagggatcaaaactgtaattaaa 49726401  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 18879339 - 18879423
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    |||| |||| |||||||||||||| |||  |||||||||||| | | ||||||||||| ||||||||||| ||||||||| ||||    
18879339 ggaccaaaattgtcaaattttaaattagggggatcaattatgcaaaatggtgaaaatagggggaccaaaattgcaattaagccta 18879423  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 12499093 - 12499018
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaa 270  Q
    |||| ||||||||| |||||||||||||  ||| ||||| || | | ||||||||||| ||||| |||||||||||    
12499093 ggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggatcaaaactgcaa 12499018  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 44362943 - 44362906
Alignment:
242 tggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    ||||||||||| ||||||||||||||||||||| ||||    
44362943 tggtgaaaatagggggaccaaaactgcaattaagccta 44362906  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 30017563 - 30017607
Alignment:
36 aactaaaa-atttataatttgatatgttttaaatgacgtgatata 79  Q
    |||||||| ||| ||||| ||||||||||||||||||||||||||    
30017563 aactaaaatattgataatatgatatgttttaaatgacgtgatata 30017607  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 44363374 - 44363458
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    |||| |||| |||| |||||||||||||  ||| |||||  | | | || |||||||| ||||||||||||||||||||| ||||    
44363374 ggaccaaaattgtcgaattttaaaatagggggaccaatttcgcaaaatgatgaaaataaggggaccaaaactgcaattaagccta 44363458  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 14626275 - 14626197
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacct 278  Q
    ||||||||||||||||||||||| |||| ||||| |||| |   |||||||||  ||||||||||||| ||||||||||    
14626275 aaaactgtcaaattttaaaataggaggaccaattctgtaaaaaagtgaaaataaagggaccaaaactgtaattaaacct 14626197  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 12619665 - 12619713
Alignment:
36 aactaaaaatttataatttgatatgttttaaatgacgtgatatatgatc 84  Q
    |||||||||||| |||||||||||||||||||| ||| |||||||||||    
12619665 aactaaaaatttgtaatttgatatgttttaaataacgagatatatgatc 12619713  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 35021046 - 35020972
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    ||||||||| |||||||||||||| ||| || ||||||| | ||||||||||| | |||| |||||| |||||||    
35021046 aaaactgtcgaattttaaaatagagggaccatttatgtaaaatggtgaaaataagaggactaaaactacaattaa 35020972  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 40609913 - 40609987
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    |||||| ||||||||||||||||  ||| ||||| |||| | | ||||||||| | |||||||||||||||||||    
40609913 aaaactctcaaattttaaaatagggggaccaattctgtaaaattgtgaaaataggaggaccaaaactgcaattaa 40609987  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 1602727 - 1602637
Alignment:
186 ttgatgaatggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaacc 277  Q
    |||||| | |||| |||||||||||||||||||| | | |||||||||  | | | ||||||||||| || ||| |||||||||||||||||    
1602727 ttgatggagggaccaaaactgtcaaattttaaaaca-agggatcaattccgcaaaatggtgaaaatagggagactaaaactgcaattaaacc 1602637  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 36632890 - 36632968
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    ||||||||| || ||||||||| | ||||||||| || ||| |||| |||||| |||||| |||||||||||||||||||    
36632890 aaaactgtcgaactttaaaatatagggatcaattctgcagaatggtaaaaata-ggggactaaaactgcaattaaaccta 36632968  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 3207697 - 3207618
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    |||| |||| |||| ||||||||||||||  || ||||| |||| | || |||||||||| ||||||||||| |||||||    
3207697 ggactaaaattgtcgaattttaaaatagagagaccaattttgtaaaatgatgaaaatatgaggaccaaaactacaattaa 3207618  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 20771681 - 20771760
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    |||| ||| ||||||||||||||| ||| ||||| || | | || |||||||| ||||||||||||| ||||||| ||||    
20771681 aaaaatgttaaattttaaaatagagggaccaattttgcaaaatgatgaaaatagggggaccaaaactacaattaagccta 20771760  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 20781475 - 20781554
Alignment:
200 aaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaaaccta 279  Q
    |||| ||| ||||||||||||||| ||| ||||| || | | || |||||||| ||||||||||||| ||||||| ||||    
20781475 aaaaatgttaaattttaaaatagagggaccaattttgcaaaatgatgaaaatagggggaccaaaactacaattaagccta 20781554  T

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Target: scaffold0157 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 21384 - 21459
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaa 270  Q
    |||| ||||||||| |||||||||||||  ||| ||||| || | | ||||||||||| ||||| |||||||||||    
21384 ggaccaaaactgtcgaattttaaaatagggggaccaattctgcaaaatggtgaaaatagggggatcaaaactgcaa 21459  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 28587694 - 28587615
Alignment:
195 ggacaaaaactgtcaaattttaaaatagaaggatcaattatgtagattggtgaaaatatggggaccaaaactgcaattaa 274  Q
    |||| ||||||||| |||||||||||||  ||| ||| | || | | ||||||||| | |||||||||||||||||||||    
28587694 ggacgaaaactgtcgaattttaaaatagggggaccaaatttgcaaaatggtgaaaacagggggaccaaaactgcaattaa 28587615  T

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