View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_10 (Length: 412)
Name: NF11990_low_10
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 40804130 - 40803719
Alignment:
| Q |
1 |
ctaagtgttcagctttgaaggatgtaccttatgtgttttcacaactggatatggtccaaattgtaatgatactgagtttgaatctttgatattttcataa |
100 |
Q |
| |
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|||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40804130 |
ctaagttttcatctttaaagtatgtaccttatgtgttttcacaactggatatggtccaaattgtaatgatactgagtttgaatctttgatattttcgtaa |
40804031 |
T |
|
| Q |
101 |
ttcaatcnnnnnnnnnaattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaattctcaactctgtctcctgcatatt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40804030 |
ttcaatctttttttttaattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaattctcaacactgtctcctgcatatt |
40803931 |
T |
|
| Q |
201 |
cgctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctcagtttttatacagtttctatattctgtgatgttaatgaagc |
300 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
40803930 |
cgctgattcagctattatgtacatgcttgccctttctgttaagttgtttattaatcctcagtttctatacagtttctatattctgtgatgtgaatgaagc |
40803831 |
T |
|
| Q |
301 |
cttgtcagcagtctcaagtagacctgaagatttccatatagccatagtggaggtaattaactctcattttgtatataaatgaaaaagcataatgtagtaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||| ||||||||||||| |
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| T |
40803830 |
cttgtcagcagtctcaagtagacctgaagatttccatatagctatagtggaggtaatgaactttcattttctatataaatgaaaaatcataatgtagtaa |
40803731 |
T |
|
| Q |
401 |
atttgaaactta |
412 |
Q |
| |
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|||||||||||| |
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| T |
40803730 |
atttgaaactta |
40803719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 117 - 412
Target Start/End: Complemental strand, 52517203 - 52516884
Alignment:
| Q |
117 |
aattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaatt---------------ctcaactctgtctcctgcatattc |
201 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| ||||||| |||||||||||| || |
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| T |
52517203 |
aattggttactactcaatatgaactagtttctgcagatggcatgcattttttattgaaattttcatggttattttactcaactttgtctcctgcatcctc |
52517104 |
T |
|
| Q |
202 |
gctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctca--gtttttatacagtttcta--------tattctgt----g |
287 |
Q |
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|||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| | |
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| T |
52517103 |
cctgatt-agcttttatgtacaagc----cctttctgttaagttgtttattaatcctcaaagtttctatacagtttctaactttctatattctgtctgtg |
52517009 |
T |
|
| Q |
288 |
atgttaatgaagccttgtcagcagtctcaagtagacctgaagatttccatatagccatagtggaggtaattaactctcattttgtatataaatgaaaaag |
387 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||| ||| |
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| T |
52517008 |
atgtgaatgaagccttgtcagcagtctcaagtagacctgaagatttccatatagccatagtggaagtaatgaactttcattttctatgtaaatgacaaat |
52516909 |
T |
|
| Q |
388 |
cataatgtagtaaatttgaaactta |
412 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
52516908 |
catgatgtagtaaatttgaaactta |
52516884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 117 - 319
Target Start/End: Original strand, 41031528 - 41031744
Alignment:
| Q |
117 |
aattggtcactactccatatgaattagtttctgcagagga--catgcattttttattgaaatt---------------ctcaactctgtctcctgcatat |
199 |
Q |
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||||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
41031528 |
aattggttactactcaatatgaactagtttctgcagaggattcatgcattttttattgaaattttcatggttcttttactcaactctgtctcctgcatct |
41031627 |
T |
|
| Q |
200 |
tcgctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctc--agtttttatacagtttctatattctgtgatgttaatga |
297 |
Q |
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|| |||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||| |||| ||||| |
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| T |
41031628 |
tccctgattcagcttttatctaca----agccctttct-ttaagttgtttattaatcctcaaagtttctttacagtttctatattctgtaatgtgaatga |
41031722 |
T |
|
| Q |
298 |
agccttgtcagcagtctcaagt |
319 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41031723 |
agccttgtcagcagtctcaagt |
41031744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 4641750 - 4641827
Alignment:
| Q |
293 |
aatgaagccttgtcagcagtctcaagtagacctgaagatttccatatagccatagtggaggtaattaactctcatttt |
370 |
Q |
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|||||||||||||||||| |||||||||| || || |||||| | ||||||||||||||||| |||| ||||||| |
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| T |
4641750 |
aatgaagccttgtcagcaatctcaagtagtcccaaatgcttccatgttgccatagtggaggtaatgaactttcatttt |
4641827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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