View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11990_low_11 (Length: 397)
Name: NF11990_low_11
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 27764579 - 27764208
Alignment:
| Q |
11 |
cagagataccaaattagagatagaaatataattactatcatatcaaataaaggatcaatataattgcataccttggcactgatagagtagaacaccaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764579 |
cagagataccaaattagagatagaaatataattactatcatatcaaataaaggatcaatataattgcataccttggcactgatagagtagaacaccaaag |
27764480 |
T |
|
| Q |
111 |
gttgtatggtagtgacattgagatgtaggatactaaggaagagtgtttgaaaaccagccactaatttagttagttgtcctggtcttgtcctagtgagaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764479 |
gttgtatggtagtgacattgagatgtaggatactaaggaagagtctttgaaaaccagccactaatttagttagttgtcctggtcttgtcctagtgagaat |
27764380 |
T |
|
| Q |
211 |
tctaaggtttgcatgagtctcgatcaatgtaacctcgatatcagctatggcagctttggtcttggatgtgtatttgttaggtgtttgggaccatgtatat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764379 |
tctaaggtttgcatgagtctcgatcaatgtaacctcgatatcagctatggcagctttggtcttggatgtgtatttgttaggtgtttgggaccatgtatat |
27764280 |
T |
|
| Q |
311 |
tgaggatacacaaaaaattgtgcaaaaggtggttttgatattgccatgtcttcattgttttgtgttacttct |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27764279 |
tgaggatacacaaaaaattgtgcaaaaggtggttttgatattgccatgtcttcattgttttgtgttacttct |
27764208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University