View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_12 (Length: 335)
Name: NF11990_low_12
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 40804210 - 40804528
Alignment:
| Q |
1 |
caaaatatatagcaaccattgcaactaattactgagatcagagtttcacaaaaaaccttaaaatggattccnnnnnnnggtctaaagtctaaaccctccg |
100 |
Q |
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| T |
40804210 |
caaaatatatagcaaccattgcaactaattacggagatcagagtttcacaaaaaaccttaaaatggattcctttttttggtctaaagtctaaatcctccg |
40804309 |
T |
|
| Q |
101 |
gttcataggggaaggggactctggtaatttggacttcggcaggggttatgcaaaacttggccaaggatttttccagccaagattcgaacttgggttctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804310 |
gttcataggggaaggggactctggtaatttggacttcggcaggggttatgcaaaacttggccaaggatttttccagccaagattcgaacttgggttctcc |
40804409 |
T |
|
| Q |
201 |
aaaacaattcaaccttaaccgaagctcattaaccacttgaattcaaccacttggccaatgacgctttgtaagatgccatagtacaaaaatattaagacaa |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804410 |
aaaacaattcaaccttaacagaagctcattaaccacttgaattcaaccacttggccaatgacgctttgtaagatgccatagtacaaaaatattaagacaa |
40804509 |
T |
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| Q |
301 |
actatacccctaaagtaac |
319 |
Q |
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||||||||||||||||||| |
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| T |
40804510 |
actatacccctaaagtaac |
40804528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 46527882 - 46527920
Alignment:
| Q |
215 |
ttaaccgaagctcattaaccacttgaattcaaccacttg |
253 |
Q |
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| T |
46527882 |
ttaactgaagctcattaaccacttgagttcaaccacttg |
46527920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 27732588 - 27732501
Alignment:
| Q |
152 |
aaaacttggccaaggatttttccagccaagattcgaacttgggttctccaaaacaattcaaccttaaccgaagctcattaaccacttg |
239 |
Q |
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||||| |||||||||||| ||||||||||||||| || ||||||||||| || ||||| ||||||| | ||| |||||| |||||| |
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| T |
27732588 |
aaaacctggccaaggattgttccagccaagattcaaatttgggttctcctgtacgattcatccttaactggagcccattaatcacttg |
27732501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 38753684 - 38753589
Alignment:
| Q |
159 |
ggccaaggatttttccagccaagattcgaacttgggttctccaaaacaattcaaccttaaccgaagctcattaaccacttgaattcaaccacttgg |
254 |
Q |
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|||||||||||||||||| || || ||||||| ||||||||| ||| ||| |||||| ||| |||||||||||||||| |||||||||||| |
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| T |
38753684 |
ggccaaggatttttccagtcaggaatcgaactcgggttctcccgaacgtttcgtccttaaatgaaactcattaaccacttgagctcaaccacttgg |
38753589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 2737361 - 2737313
Alignment:
| Q |
202 |
aaacaattcaaccttaaccgaagctcattaaccacttgaattcaaccac |
250 |
Q |
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|||||||||| |||| || ||| ||||||||||||||||| |||||||| |
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| T |
2737361 |
aaacaattcatcctttactgaaactcattaaccacttgaactcaaccac |
2737313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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