View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_13 (Length: 328)
Name: NF11990_low_13
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 14282746 - 14283045
Alignment:
| Q |
14 |
gatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282746 |
gatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaa |
14282845 |
T |
|
| Q |
114 |
agcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282846 |
agcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttg |
14282945 |
T |
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| Q |
214 |
gccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282946 |
gccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttatt |
14283045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 14320900 - 14321194
Alignment:
| Q |
19 |
atatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagctt |
118 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |
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| T |
14320900 |
atatcaaaacaataccttcactagtcgtactatctttccttgatgtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcct |
14320999 |
T |
|
| Q |
119 |
aatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaa |
218 |
Q |
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||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14321000 |
aatgactgcaatgaagcccgtgaaagctatttgtttccaaaaacacctaaaaagggtaactccaactggatgcttactgttttcctctggttttggccaa |
14321099 |
T |
|
| Q |
219 |
ttgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttatt |
313 |
Q |
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||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14321100 |
ttgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagtttaaggggtgttttgtaacctttatt |
14321194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 14304509 - 14304803
Alignment:
| Q |
19 |
atatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagctt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||| | |
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| T |
14304509 |
atatcaaaacaataccttcactagtcggactatctttctgtgatgtgaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcct |
14304608 |
T |
|
| Q |
119 |
aatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaa |
218 |
Q |
| |
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|||| |||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
14304609 |
catgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactgttttcctctggtttcggccaa |
14304708 |
T |
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| Q |
219 |
ttgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttatt |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
14304709 |
ttgttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcctttatt |
14304803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 25885577 - 25885876
Alignment:
| Q |
14 |
gatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaa |
113 |
Q |
| |
|
|||| ||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
25885577 |
gatcaatatcaaaataataccttcactagtagtactatctttccttgatgtgaaatcaacaaaactctgaatcaacagtggaccaatatacataacacaa |
25885676 |
T |
|
| Q |
114 |
agcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttg |
213 |
Q |
| |
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||| |||| |||||||||||||| || ||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||||||| |
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| T |
25885677 |
agcctaatcattgcaaggaagccagtgaaagctatgtgtttccaaaaacacctaaataaggctactataactggatgcttactattttcctctggttttg |
25885776 |
T |
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| Q |
214 |
gccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttatt |
313 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
25885777 |
gccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagtttaaggggagttttgtaacctttatt |
25885876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 44349421 - 44349720
Alignment:
| Q |
14 |
gatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaa |
113 |
Q |
| |
|
|||| ||||||||| |||| |||||||| | |||| ||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
44349421 |
gatcaatatcaaaataatatcttcactagtagtactatctttccttgatgtaaaatcaacaaaactctgaatcaacagtggaccaatatacataacacaa |
44349520 |
T |
|
| Q |
114 |
agcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttg |
213 |
Q |
| |
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||| |||| | |||||||||||| || | ||||||||||||||||||||||||||| | || || ||||||||||||||| |||||||||||||||| |
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| T |
44349521 |
agcctaatcactgcaaggaagccagtgatagctatgtgtttccaaaaacacctaaataaggctaccataactggatgcttactgttttcctctggttttg |
44349620 |
T |
|
| Q |
214 |
gccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttatt |
313 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| || ||||||||| |||| | |||||||||||||||||| |||| |||||| ||||| |
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| T |
44349621 |
gccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatcttctagtttaaggggagttttgtaaccgttatt |
44349720 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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