View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11990_low_15 (Length: 301)

Name: NF11990_low_15
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11990_low_15
NF11990_low_15
[»] chr2 (1 HSPs)
chr2 (83-278)||(39191561-39191758)
[»] chr8 (3 HSPs)
chr8 (18-244)||(11544384-11544604)
chr8 (159-244)||(22655900-22655985)
chr8 (149-214)||(22689290-22689355)
[»] chr3 (20 HSPs)
chr3 (18-241)||(24839564-24839781)
chr3 (18-241)||(19944028-19944245)
chr3 (71-244)||(19956451-19956618)
chr3 (136-244)||(19838819-19838927)
chr3 (125-244)||(19818975-19819094)
chr3 (125-244)||(20036187-20036306)
chr3 (117-244)||(26653555-26653682)
chr3 (145-244)||(17115148-17115247)
chr3 (125-244)||(19832284-19832403)
chr3 (145-241)||(26647436-26647532)
chr3 (117-241)||(26652122-26652246)
chr3 (145-244)||(20046555-20046654)
chr3 (147-241)||(19951558-19951652)
chr3 (121-211)||(19849407-19849497)
chr3 (144-225)||(19812717-19812798)
chr3 (145-244)||(20015785-20015884)
chr3 (144-241)||(19853931-19854028)
chr3 (71-206)||(19858436-19858565)
chr3 (149-222)||(19989967-19990040)
chr3 (174-241)||(20033924-20033991)
[»] chr1 (2 HSPs)
chr1 (145-241)||(1717652-1717748)
chr1 (146-244)||(38483409-38483507)
[»] chr5 (2 HSPs)
chr5 (125-244)||(9815449-9815568)
chr5 (146-244)||(26354511-26354609)
[»] chr7 (3 HSPs)
chr7 (146-244)||(12495575-12495677)
chr7 (146-244)||(12519379-12519478)
chr7 (146-244)||(12579673-12579773)
[»] chr4 (1 HSPs)
chr4 (149-242)||(6397323-6397418)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 83 - 278
Target Start/End: Complemental strand, 39191758 - 39191561
Alignment:
Q  83 atatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39191758 atatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctga 39191659  T
Q  183 t-aagtgt-ggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggatattggtctaaagaaggagaagaaggatttggataa 278  Q
    | |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  39191658 taaagtgtagaaatgttttatccaaaggatgaaactttggtaccgcttaagaaggatttggatattggtctaaaaaagaaaaagaaggatttggataa 39191561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 11544384 - 11544604
Alignment:
Q  18 gttcaaaaacttgcaaccaaaacccaagtcgataaaaaatggagaccatgtactgttgaggtggaatatggttaagcccttgaaagttgacagtgtgact 117  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||||||||||||| |||||||| || ||||||| ||||||||| |||| | ||||       
T  11544384 gttcaaaaatttgcaaccaaaacccaagttgatcaacaatggagaccatgtactgatgaggtggcatttggttaaacccttgaaaattgataatgtg--- 11544480  T
Q  118 gtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactt 217  Q
       ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||    
T  11544481 ---aggttggcattagattcagctaaggatgattttctttggcgcccatatgttcaatatgccgataagtttgaaatgttttatccaaatgatgaaactt 11544577  T
Q  218 tggtaccacttaagaaggatttggata 244  Q
    ||||||| |||||||||||||||||||    
T  11544578 tggtaccgcttaagaaggatttggata 11544604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 22655985 - 22655900
Alignment:
Q  159 gcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 244  Q
    |||||||||||||| |||| |||||||||| |   |||||||||| || ||||||| |||||||||| ||||||||||||||||||    
T  22655985 gcgtccatatgttcgatattctgataagtgcgagctgttttatcctaatgatgaaattttggtaccatttaagaaggatttggata 22655900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 22689355 - 22689290
Alignment:
Q  149 attttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaa 214  Q
    ||||| |||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  22689355 attttatttggcgtccttatgttagatatgctgataagtgtggagtgttttatccaaaggatgaaa 22689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 24839781 - 24839564
Alignment:
Q  18 gttcaaaaacttgcaaccaaaacccaagtcgataaaaaatggagaccatgtactgttgaggtggaatatggttaagcccttgaaagttgacagtgtgact 117  Q
    ||||||||| ||||| ||| ||||||||| |   || ||| ||||||||||| ||||||||||| |||  |||||| |||||||| |||||| |||||      
T  24839781 gttcaaaaatttgcagccacaacccaagttgggcaataatcgagaccatgtattgttgaggtggcataatgttaaggccttgaaaattgacaatgtga-- 24839684  T
Q  118 gtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactt 217  Q
        |||||||||| || || |  |  ||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  24839683 ----ggttggcattagactcagtcatcgatgattttatttggcgtccttatgttcaatatgttgataagtgtggagtgttttatccaaaggatgaaactt 24839588  T
Q  218 tggtaccacttaagaaggatttgg 241  Q
    |||||||| ||||||| |||||||    
T  24839587 tggtaccatttaagaaagatttgg 24839564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 19944028 - 19944245
Alignment:
Q  18 gttcaaaaacttgcaaccaaaacccaagtcgataaaaaatggagaccatgtactgttgaggtggaatatggttaagcccttgaaagttgacagtgtgact 117  Q
    ||||||||| ||||| ||| |||| |||| ||| || ||||||||||||||| ||||||||||| |||  |||||| |||||||| |||||| ||||       
T  19944028 gttcaaaaatttgcagccacaaccaaagttgatcaataatggagaccatgtattgttgaggtggcataatgttaaggccttgaaaattgacaatgtgg-- 19944125  T
Q  118 gtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactt 217  Q
        |||||||||| ||||| ||||   |||||||| |||| ||||| ||||||||||||||||||||||||||| | | ||||||||| ||||||||||    
T  19944126 ----ggttggcattagattcagctatcaatgattttatttgccgtccttatgttcaatatgctgataagtgtggagtatattatccaaatgatgaaactt 19944221  T
Q  218 tggtaccacttaagaaggatttgg 241  Q
    |||||||| |||| || |||||||    
T  19944222 tggtaccatttaaaaaagatttgg 19944245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 19956451 - 19956618
Alignment:
Q  71 tgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgt 170  Q
    |||| |||||| ||| |||||||||||||| |||||||| ||| |      || ||||||| || ||||||| |||||| ||||||||||||||||||||    
T  19956451 tgtttaggtggcataaggttaagcccttgatagttgacaatgtta------ggatggcattagactcggctatggatgactttctttggcgtccatatgt 19956544  T
Q  171 tcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 244  Q
    || |||| || |||| |||||  | ||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  19956545 tcgatattctcataaatgtgggctattttatccaaatgatgaaattttggtaccatttaagaaggatttggata 19956618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 19838819 - 19838927
Alignment:
Q  136 tcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaagg 235  Q
    ||||||| |||||| |||||||||||||||||||||| |||| |||||||||||| | ||||||||||||| ||||||| |||||||||| |||||| ||    
T  19838819 tcggctatggatgactttctttggcgtccatatgttcgatattctgataagtgtgaactgttttatccaaatgatgaaattttggtaccatttaagaggg 19838918  T
Q  236 atttggata 244  Q
    |||| ||||    
T  19838919 atttagata 19838927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 19818975 - 19819094
Alignment:
Q  125 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 224  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||   |||||||||| || |||| || |||||||||    
T  19818975 tggcattagactcggctaaggatgactttctttggcgtccatatgttcgatattctgataagtgtgagctgttttatccgaatgatggaattttggtacc 19819074  T
Q  225 acttaagaaggatttggata 244  Q
    | |||||| |||||||||||    
T  19819075 atttaagatggatttggata 19819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 20036306 - 20036187
Alignment:
Q  125 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 224  Q
    ||||||| || ||||||| |||||| |||||||||||||||||||||| |||| ||||||||| || | || |||||||||| |||||||||||||||||    
T  20036306 tggcattagactcggctatggatgactttctttggcgtccatatgttcgatattctgataagtttgaactgctttatccaaatgatgaaactttggtacc 20036207  T
Q  225 acttaagaaggatttggata 244  Q
    | ||| |||| |||||||||    
T  20036206 atttacgaagtatttggata 20036187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 26653555 - 26653682
Alignment:
Q  117 tgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaact 216  Q
    ||||||||||||||| || || || |  |||||||||||||||||||||||||||  |||| || | |||||||||||||||||||||||  |||||| |    
T  26653555 tgtgaggttggcattagactcagcaattgatgattttctttggcgtccatatgttagatatcctaacaagtgtggaatgttttatccaaataatgaaatt 26653654  T
Q  217 ttggtaccacttaagaaggatttggata 244  Q
    | ||||||| ||||||||||||||||||    
T  26653655 tgggtaccatttaagaaggatttggata 26653682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 17115148 - 17115247
Alignment:
Q  145 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 244  Q
    |||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||| | || || ||||||||||    
T  17115148 gatgattttctttggcgtccatacattagatatgctgataagtgtggaatgttttatccaaatgatgaaattttggtaccattcaaaaaagatttggata 17115247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 19832284 - 19832403
Alignment:
Q  125 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 224  Q
    ||||||| || | |||||||||||| |||||||||||||||||||||| |||| ||||||||||||   |||||||||| || |||| || |||||||||    
T  19832284 tggcattagacttggctaaggatgactttctttggcgtccatatgttcgatattctgataagtgtgagctgttttatccgaatgatggaattttggtacc 19832383  T
Q  225 acttaagaaggatttggata 244  Q
    | |||||| |||||||||||    
T  19832384 atttaagatggatttggata 19832403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 26647436 - 26647532
Alignment:
Q  145 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 241  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||| | ||||||||||||| ||||||| || ||||||| ||||||| |||||||    
T  26647436 gatgattttctttggcgtccttatgttagatatgctgataagtgtgaattgttttatccaaatgatgaaatttcggtaccatttaagaaagatttgg 26647532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 26652122 - 26652246
Alignment:
Q  117 tgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaact 216  Q
    ||||||||||||||| ||||| ||||   |||||||| |||||||||| |||||||  ||||| |||||||||| | ||||||||||||| || | ||||    
T  26652122 tgtgaggttggcattagattcagctatcaatgattttatttggcgtccttatgttcggtatgcagataagtgtgaagtgttttatccaaatgacggaact 26652221  T
Q  217 ttggtaccacttaagaaggatttgg 241  Q
    ||||||||| ||||||| |||||||    
T  26652222 ttggtaccatttaagaaagatttgg 26652246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 20046555 - 20046654
Alignment:
Q  145 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 244  Q
    |||||||||||||||||||||||||||  |||| |||| ||||||||||| |||||||||||  | |||| || ||||||| ||||||||||||||||||    
T  20046555 gatgattttctttggcgtccatatgttagatatcctgacaagtgtggaattttttatccaaataacgaaatttgggtaccatttaagaaggatttggata 20046654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 19951558 - 19951652
Alignment:
Q  147 tgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 241  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||| || || |||| |||||| ||| ||||||| |||||||    
T  19951558 tgattttatttggcgtccatatgttagatatgctgataagtgtggaatgttttatccgaatgaagaaattttggtgccatttaagaaagatttgg 19951652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 19849407 - 19849497
Alignment:
Q  121 aggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatg 211  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||| |  ||||||| |||| | |||||||||||||||||| ||||    
T  19849407 aggttggcattagactcggctatggatgattttctttggcgtccatatgctagatatgctcataattatggaatgttttatccaaatgatg 19849497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 19812717 - 19812798
Alignment:
Q  144 ggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacca 225  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||| | ||||||||||||| ||||||| || |||||||    
T  19812717 ggatgattttctttggcgtccatatgttagatatgccgataagtgtgcattgttttatccaaatgatgaaatttcggtacca 19812798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 20015884 - 20015785
Alignment:
Q  145 gatgattttctttggcgtccatatgttca-atatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggat 243  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||   ||||||||||||| |||| |  ||| |||||| ||||||| |||||||||    
T  20015884 gatgattttctttggcgtccatat-ttcagatatgctgataagtgtgatttgttttatccaaatgatgcattttttgtaccatttaagaaagatttggat 20015786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 19853931 - 19854028
Alignment:
Q  144 ggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 241  Q
    |||||||||| |||||||||| ||||||   |||||| ||||||||||||||||||| || || ||||||| |  ||||||| ||||||| |||||||    
T  19853931 ggatgattttatttggcgtccttatgttagctatgctcataagtgtggaatgttttacccgaatgatgaaattcgggtaccatttaagaacgatttgg 19854028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 19858436 - 19858565
Alignment:
Q  71 tgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgt 170  Q
    |||| |||||| ||| ||||||| ||||||||||||||| ||| |       ||||||||| || |||||||  ||||||||| |||||||||| || ||    
T  19858436 tgtttaggtggcataaggttaaggccttgaaagttgacaatgttaa------gttggcattagactcggctattgatgattttatttggcgtccttacgt 19858529  T
Q  171 tcaatatgctgataagtgtggaatgttttatccaaa 206  Q
    |  |||||| |||||||||||| |||||||||||||    
T  19858530 tagatatgcagataagtgtggactgttttatccaaa 19858565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 19989967 - 19990040
Alignment:
Q  149 attttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggta 222  Q
    |||||||||||||||||||||||  || |||||| ||||||| | ||||||||||||| |||| ||||| ||||    
T  19989967 attttctttggcgtccatatgttagatttgctgagaagtgtgaactgttttatccaaatgatggaacttgggta 19990040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 20033991 - 20033924
Alignment:
Q  174 atatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 241  Q
    |||||||||||||||| || |||||||||| || ||||||| ||  |||||| ||||||| |||||||    
T  20033991 atatgctgataagtgtagactgttttatccgaatgatgaaatttcagtaccatttaagaatgatttgg 20033924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 1717652 - 1717748
Alignment:
Q  145 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 241  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||| | ||||||| |||||||||| ||||||| |||||||    
T  1717652 gatgattttatttggcgtccatatgttagatatgctgataagcgtggaatgttttatccatatgatgaaattttggtaccatttaagaaagatttgg 1717748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 38483409 - 38483507
Alignment:
Q  146 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 244  Q
    |||||||||||| |||||||||| ||  ||||| ||||||||||||  ||||||||| ||| |||| |  |||||||||  |||||||  |||||||||    
T  38483409 atgattttctttagcgtccatattttagatatgatgataagtgtggtttgttttatcaaaatgatgcacttttggtaccgtttaagaaatatttggata 38483507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 9815449 - 9815568
Alignment:
Q  125 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 224  Q
    ||||||| || ||||||| ||||||||||||||||||||||||| ||  |||||||||||| || ||  ||||||||||||| ||||    |||||||||    
T  9815449 tggcattagactcggctatggatgattttctttggcgtccatattttagatatgctgataactgcggtgtgttttatccaaatgatgcgcttttggtacc 9815548  T
Q  225 acttaagaaggatttggata 244  Q
    | ||||||| ||||||||||    
T  9815549 atttaagaaagatttggata 9815568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 26354609 - 26354511
Alignment:
Q  146 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 244  Q
    ||||||||||||||||||||||| ||  |||||| ||| | |||||  | ||||||||||| |||| || || ||||||| ||||||| ||||||||||    
T  26354609 atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcggtaccatttaagaaagatttggata 26354511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 12495677 - 12495575
Alignment:
Q  146 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaa----tgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 241  Q
    |||||||||||||||||||||||| |  |||| |||| ||||||||||    | |||||||||||  |||||| || ||||||| |||||||||||||||    
T  12495677 atgattttctttggcgtccatatgctagatatcctgagaagtgtggaattttttttttatccaaataatgaaatttgggtaccatttaagaaggatttgg 12495578  T
Q  242 ata 244  Q
    |||    
T  12495577 ata 12495575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 12519478 - 12519379
Alignment:
Q  146 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgtttt--atccaaaggatgaaactttggtaccacttaagaaggatttggat 243  Q
    ||||||||||||| |||||||||| |  |||| |||| ||||||||||| ||||  |||||||  |||||| || ||||||| |||||||||||||||||    
T  12519478 atgattttctttg-cgtccatatgctagatatcctgagaagtgtggaattttttttatccaaataatgaaatttgggtaccatttaagaaggatttggat 12519380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 12579773 - 12579673
Alignment:
Q  146 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgt--tttatccaaaggatgaaactttggtaccacttaagaaggatttggat 243  Q
    ||||||||||||| |||||||||| |  |||| || | ||||||||||| |  ||||||||||  |||||| || ||||||| |||||||||||||||||    
T  12579773 atgattttctttgacgtccatatgctagatatcctaagaagtgtggaatttcttttatccaaataatgaaatttgggtaccatttaagaaggatttggat 12579674  T
Q  244 a 244  Q
    |    
T  12579673 a 12579673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 6397418 - 6397323
Alignment:
Q  149 attttctttggcgtccatatgttcaatatgctgataagtgtggaat--gttttatccaaaggatgaaactttggtaccacttaagaaggatttgga 242  Q
    |||||||||||||||||||||||  |||| |||| |||||||||||   |||||||||||  | ||||  ||||||||| ||||||||||||||||    
T  6397418 attttctttggcgtccatatgttagatatcctgagaagtgtggaattctttttatccaaataacgaaatcttggtaccatttaagaaggatttgga 6397323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University