View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_19 (Length: 250)
Name: NF11990_low_19
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_19 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 14282157 - 14282396
Alignment:
| Q |
11 |
caaaggtaagaacagatacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
110 |
Q |
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| T |
14282157 |
caaaggtaagaacagctacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
14282256 |
T |
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| Q |
111 |
acgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaa |
210 |
Q |
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| T |
14282257 |
acgaaactgttgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaa |
14282356 |
T |
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| Q |
211 |
tcacggctcctcattatctgaaactgaaaactattactac |
250 |
Q |
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| T |
14282357 |
tcacggctcctcattatctgaaactgaaaactattactac |
14282396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 14320306 - 14320545
Alignment:
| Q |
11 |
caaaggtaagaacagatacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
110 |
Q |
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||||||||||||||| ||||| || || |||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
14320306 |
caaaggtaagaacagttacagctaatggggcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttc |
14320405 |
T |
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| Q |
111 |
acgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaa |
210 |
Q |
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| T |
14320406 |
gcgaaactgttgaattttgttaccaaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaa |
14320505 |
T |
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| Q |
211 |
tcacggctcctcattatctgaaactgaaaactattactac |
250 |
Q |
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| T |
14320506 |
tcgcggctcgtcattatcttaaactggaaactattactac |
14320545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 54 - 249
Target Start/End: Original strand, 14303958 - 14304153
Alignment:
| Q |
54 |
tcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgct |
153 |
Q |
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| T |
14303958 |
tcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccacgct |
14304057 |
T |
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| Q |
154 |
tgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattacta |
249 |
Q |
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| T |
14304058 |
tgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattacta |
14304153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 25885037 - 25885216
Alignment:
| Q |
60 |
gttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaac |
159 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
25885037 |
gttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaac |
25885136 |
T |
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| Q |
160 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaa |
239 |
Q |
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| T |
25885137 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaa |
25885216 |
T |
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