View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_2 (Length: 689)
Name: NF11990_low_2
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 14 - 689
Target Start/End: Complemental strand, 36053679 - 36053004
Alignment:
| Q |
14 |
atggacatcaggatcccattgttcaaaagtgaagtgcaaggagcaatcgacctcttggctgtagactatttccattccttcaaggtcacacatcagccca |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36053679 |
atggccatcaggatcccattgttcaaaagtgaagtgcaaggagcaatcgacctcttggctgtagactatttccattccttcaaggtcacacatcagccca |
36053580 |
T |
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| Q |
114 |
aaaaactcatacttgacagcatctgattgaagcaacatatcaagtgttgaatttaatctaaccaaaacctcttgaacataaccacaaaggcctatattgg |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36053579 |
aaaaactcatacttgacaacatctgattgaagcaacatatcaagtgttgaatttaatctaaccaaaacctcttgaacataaccacaaaggcctatattgg |
36053480 |
T |
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| Q |
214 |
caactagcaacatacttgacacaccaccaattaagccacaatgcttgataaaaccatgatgagttttaaaaattgaagcaattccatgcagtgctatatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
36053479 |
caactagcaacatacttgacacaccaccaattaagccacaatgcttgataaaaccatgatgagttttaaaaagtgaagcaattccatgcaatgctatatc |
36053380 |
T |
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| Q |
314 |
ataaccattagcaaaattcgacctaatgccaactacattgtatgttaactcactgagagctgatggaccaacacaaaatttagaaattccacttctgatt |
413 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36053379 |
ataaccattagcaaaattcaacctaatgccaactacattgtatgttaactcactgagagctgatggaccaacacaaaatttagaaattccacttctgatt |
36053280 |
T |
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| Q |
414 |
gcaacattagtgactatatgaagaaaagtagcaagagtttttattgcataagaatgaaatgttgtcacctctccttgattgacctcaaaaacagtgccac |
513 |
Q |
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| T |
36053279 |
gcaacattagtgactatatgaagaaaagtagcaagagtttttattgcataagaatgaaatgttgtcacctctccttgattgacctcaaaaacagtgccac |
36053180 |
T |
|
| Q |
514 |
atagtgagtttaatagtttaaatttatccagccattgtagaagtaagccaacaaaatatgcacatgtatatagaccatcttgaatccatagtgatttgtt |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36053179 |
atagtgagtttaatagtttaaatttatccagccattgtagaagtaagccaacaaaatatgcacatgtatatagaccatcttgaatccgtagtgatttgtt |
36053080 |
T |
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| Q |
614 |
gggaatctcattcaggtttaaatatgaactactagaggcatgagggtgagatatcaaaatattaaggaattttccc |
689 |
Q |
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| T |
36053079 |
gggaatctcgttcaggtttaaatatgaactactagaggcatgagggtgagatatcaaaatattaaggaattttccc |
36053004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 2483944 - 2484122
Alignment:
| Q |
25 |
gatcccattgttcaaaagtgaagtgcaaggagcaatcgacctcttggctgtagactatttccattccttcaaggtcacacatcagcccaaaaaactcata |
124 |
Q |
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| T |
2483944 |
gatcccattgttcaaaaatgaagtgcaaggagcaatcaaattcttggttgtagaccatttttatgctttgaaggtcatacatcgacccaaaaagttcata |
2484043 |
T |
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| Q |
125 |
cttgacagcatctgattgaagcaacatatcaagtgttgaatttaatctaaccaaaacctcttgaacataaccacaaagg |
203 |
Q |
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||| ||| |||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||| ||||| ||||| |
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| T |
2484044 |
ctttacaacatctgattgaaacaacatatcaagtgttgaatttaatataagcaaatcctcttgaacacaaccataaagg |
2484122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 240 - 395
Target Start/End: Complemental strand, 30455273 - 30455118
Alignment:
| Q |
240 |
ccaattaagccacaatgcttgataaaaccatgatgagttttaaaaattgaagcaattccatgcagtgctatatcataaccattagcaaaattcgacctaa |
339 |
Q |
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| T |
30455273 |
ccaattaagccataatgcttgatcaaaccataatgaatttcaaaaagtgaagcaattccatgaggtgttatatcataaccaatagcaacattgaatctaa |
30455174 |
T |
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| Q |
340 |
tgccaactacattgtatgttaactcactgagagctgatggaccaacacaaaattta |
395 |
Q |
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| T |
30455173 |
ttccaacttcattgtatcctaactcactgatagttgatgcagcaacaccaaattta |
30455118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 2484131 - 2484203
Alignment:
| Q |
240 |
ccaattaagccacaatgcttgataaaaccatgatgagttttaaaaattgaagcaattccatgcagtgctatat |
312 |
Q |
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|||||||||||| |||||||||| |||||||||||| ||| ||||| |||||||||| |||| |||| ||||| |
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| T |
2484131 |
ccaattaagccataatgcttgatcaaaccatgatgaatttcaaaaagtgaagcaattgcatgaagtgttatat |
2484203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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