View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_21 (Length: 241)
Name: NF11990_low_21
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 22862604 - 22862826
Alignment:
| Q |
19 |
cgactgttgaccaacacaggcaaccatttgacatatattgataggagatcctttggagccacactgcgacatgatcaatggactattcctccagtgtaat |
118 |
Q |
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| T |
22862604 |
cgactgttgaccaacacaggcaaccatttgacatatattgataggagatcctttagagccacactgcgacatgatcaatggactattcctccagtgtaat |
22862703 |
T |
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| Q |
119 |
gtttccatgcaaacctgggaatataacaaattatagacaaggagaatcaaaattaaatagttttttggccacagggctcacgggtttctcaaacaaaaac |
218 |
Q |
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| T |
22862704 |
gtttccatgcaaacctgggaatataacaaattataaacaaggacaatcaaaattaaatagtttttttgccacaggactcagggggttctcaaacaaaaac |
22862803 |
T |
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| Q |
219 |
aaatatttctatgatttgccact |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
22862804 |
aaatatttctatgatttgccact |
22862826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 22832824 - 22832988
Alignment:
| Q |
19 |
cgactgttgaccaacacaggcaaccatttgacatatattgataggagatcctttggagccacactgcgacatgatcaatggactattcctccagtgtaat |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22832824 |
cgactgttgaccaacacaggcaaccatttgacagatattaataggagatcctttggagccacactgcgacatgatcaatggactattccgccagtgtaat |
22832923 |
T |
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| Q |
119 |
gtttccatgcaaacctgggaatataacaaattatagacaaggagaatcaaaattaaatagttttt |
183 |
Q |
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|||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
22832924 |
gttttcatgcaaacctgggaatataagacattatagacaaggagaatcaaaataaaatagttttt |
22832988 |
T |
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