View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_22 (Length: 219)
Name: NF11990_low_22
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 4977326 - 4977138
Alignment:
| Q |
12 |
gagatgaagatgacggagatttggtaactccgttacggcgagaggaagagttccggtcatgttgttgttgtagagatcaagaacttcaaggtttttgaga |
111 |
Q |
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| T |
4977326 |
gagatgaagatgacggagatttggtaactccgttacggcgagaggaagagttccggtcatgttgttgttgtagagatcaagaacttcaaggtttttgaga |
4977227 |
T |
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| Q |
112 |
agagaaagctcggaagggaaagttccgttgaagacattgttggagaggttgaggagacggaggttagtgacggcggagagcgacggcgg |
200 |
Q |
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| T |
4977226 |
agagaaagctcggaagggaaagttccgttgaagacattgttggagaggttgaggagacggaggttagtgacggcggagagcgacggcgg |
4977138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 40953256 - 40953358
Alignment:
| Q |
46 |
acggcgagaggaagagttccggtcatgttgttgttgtagagatcaagaacttcaaggtttttgagaagagaaagctcggaagggaaagttccgttgaaga |
145 |
Q |
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| T |
40953256 |
acggcgagagcaagtattccgatcatgttgttgttgtagagatcgagaactttgaggttcatgagaagagaaagcctggaaggaaaagtatcgttgaaaa |
40953355 |
T |
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| Q |
146 |
cat |
148 |
Q |
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||| |
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| T |
40953356 |
cat |
40953358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 40406034 - 40406067
Alignment:
| Q |
64 |
ccggtcatgttgttgttgtagagatcaagaactt |
97 |
Q |
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| T |
40406034 |
ccggtcatgttgttgttgtagaggtcaagaactt |
40406067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 21139932 - 21139874
Alignment:
| Q |
100 |
aggtttttgagaagagaaagctcggaagggaaagttccgttgaagacattgttggagag |
158 |
Q |
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||||| || |||||| |||||||| |||||||||| |||||||||||||||||||||| |
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| T |
21139932 |
aggttcttaagaagacaaagctcgaaagggaaagtgtcgttgaagacattgttggagag |
21139874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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