View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11990_low_7 (Length: 446)
Name: NF11990_low_7
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 23 - 436
Target Start/End: Original strand, 11861362 - 11861775
Alignment:
| Q |
23 |
aaaaacttcatttcgcttccggaacttcacattcgagattgtttcaagttgaattctctacctgaaggtttccagtcttcgagttcactccaaaaactca |
122 |
Q |
| |
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|||||||||||||| ||| ||||||||||||| |||||||||| || || |||||||| |||||||| |||||| |||||||||||||| ||||| |
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| T |
11861362 |
aaaaacttcatttcacttgaggaacttcacattagagattgttttaatttagcgtctctaccacaaggtttcaagtctttgagttcactccaaacactca |
11861461 |
T |
|
| Q |
123 |
ctattgaaagatgtcaagaacttgatcttgacaactctcaaaataagtgggagggtctgaaaaaccttcgttctcttacagtaaggagtattccaaaact |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11861462 |
ctattgaaagatgtcaagaacttgatcttgacaaacatccaaatgagtgggagggtctgaaaaaccttcgttctcttacattaaggagtattccaaaact |
11861561 |
T |
|
| Q |
223 |
gaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaac |
322 |
Q |
| |
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||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
11861562 |
taagtcccttccatggggagttgaaaatgtgaacactttgaaagacttaaggatttatgattgtcatggtttaacttttttaccagaaagtataggtaac |
11861661 |
T |
|
| Q |
323 |
ctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattatta |
422 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11861662 |
ctcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattatta |
11861761 |
T |
|
| Q |
423 |
tggattgccctttg |
436 |
Q |
| |
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|||||||||||||| |
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| T |
11861762 |
tggattgccctttg |
11861775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 170 - 436
Target Start/End: Original strand, 11829410 - 11829676
Alignment:
| Q |
170 |
tgggagggtctgaaaaaccttcgttctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagact |
269 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11829410 |
tgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttgaaaacgtgaaaactttgaaagact |
11829509 |
T |
|
| Q |
270 |
taaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttagg |
369 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
11829510 |
tgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttaga |
11829609 |
T |
|
| Q |
370 |
ttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttg |
436 |
Q |
| |
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|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11829610 |
ttctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattgccctttg |
11829676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 432
Target Start/End: Original strand, 12040136 - 12040566
Alignment:
| Q |
2 |
tctccaccaacgagttggattaaaaacttcatttcgcttccggaacttcacattcgagattgtttcaagttgaattctctacctgaaggtttccagtctt |
101 |
Q |
| |
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|||||||| | ||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||| |
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| T |
12040136 |
tctccaccgaagagatggcttaaaaacttcatttcacttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctt |
12040235 |
T |
|
| Q |
102 |
cgagttcactccaaaaactcactattgaaagatgtcaagaacttgatcttgacaactctcaaaataagtgggagggtctgaaaaaccttcgttctcttac |
201 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||| | |||| ||||||||||||||| |||||||||||||||||| |
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| T |
12040236 |
tgagttcactcgaaacactcactattgaaagatgtcaacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttac |
12040335 |
T |
|
| Q |
202 |
agtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttct |
301 |
Q |
| |
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| |||||||||||||||| || ||||||||||| |||| || | ||||| |||| ||| ||||||| ||||||||||||| |||||||||||| |
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| T |
12040336 |
attaaggagtattccaaatctcaagtcccttcctcagggattcgagattgtgaactctttacaagtcttaaggctttatgattgccagggtttaacttct |
12040435 |
T |
|
| Q |
302 |
ttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagt |
401 |
Q |
| |
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| || ||||| ||| | ||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||| |
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| T |
12040436 |
ctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagttagattctctgcccaaaggaatggaaacgctacagt |
12040535 |
T |
|
| Q |
402 |
ctctaaatactttgattattatggattgccc |
432 |
Q |
| |
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||||||| ||||||||||||| ||| ||||| |
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| T |
12040536 |
ctctaaagactttgattattagggactgccc |
12040566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 3 - 436
Target Start/End: Complemental strand, 11901176 - 11900743
Alignment:
| Q |
3 |
ctccaccaacgagttggattaaaaacttcatttcgcttccggaacttcacattcgagattgtttcaagttgaattctctacctgaaggtttccagtcttc |
102 |
Q |
| |
|
|||||||| ||| ||| |||||||||| |||||||| ||||||||||||| |||||||| | | || || ||| |||| |||||||| |||||| |
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| T |
11901176 |
ctccaccagagaggtggcttaaaaactttgtttcgcttgaggaacttcacattagagattgtgttattttaaagtctttaccacaaggtttcaagtcttt |
11901077 |
T |
|
| Q |
103 |
gagttcactccaaaaactcactattgaaagatgtcaagaacttgatcttgacaactctcaaaataagtgggagggtctgaaaaaccttcgttctcttaca |
202 |
Q |
| |
|
|||||||||| | |||||||||||| |||||| ||||||||||||| |||| ||| || | | ||| ||||||||| ||| ||||||||||||||| |
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| T |
11901076 |
gagttcactcatatcactcactattgagagatgtgaagaacttgatctcgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttaca |
11900977 |
T |
|
| Q |
203 |
gtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctt |
302 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||| | ||||||| |||| ||||| | || |||||| ||||||||||||||||| ||||| |
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| T |
11900976 |
ttaaggagtattcccaaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgccatggtctaactgacc |
11900877 |
T |
|
| Q |
303 |
taccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtc |
402 |
Q |
| |
|
|| ||||||| ||||||||||| ||||| |||| ||||| ||| |||||||||||||||| |||| || ||||||||| || ||||||| ||| |||| |
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|
| T |
11900876 |
taacagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtc |
11900777 |
T |
|
| Q |
403 |
tctaaatactttgattattatggattgccctttg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11900776 |
tctaaatactttgattattatggattgccctttg |
11900743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 388
Target Start/End: Original strand, 11733223 - 11733417
Alignment:
| Q |
194 |
tctcttacagtaaggagtattccaaaactgaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtt |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||||| || | ||| || |||| ||||| | |||||||| ||||||||||||||||||| | ||| |
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|
| T |
11733223 |
tctcttactttaaggagtattccaaaactagtgacccttacacgcggatttggaaacttgaaatcattgaaagatttaaggatttatgattgccctagtt |
11733322 |
T |
|
| Q |
294 |
taacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatg |
388 |
Q |
| |
|
||||| ||||||||||| |||| || || ||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||| |
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|
| T |
11733323 |
taactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatg |
11733417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 11829215 - 11829368
Alignment:
| Q |
2 |
tctccaccaacgagttggattaaaaacttcatttcgcttccggaacttcacattcgagattgtttcaagttgaattctctacctgaaggtttccagtctt |
101 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| ||| ||||||||||||| |||||||||| | ||| | |||||||| |||||||| ||| || |
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|
| T |
11829215 |
tctccaccagagagttggcttaaaaacttcatttcacttgaggaacttcacattagagattgttttattttggagtctctaccacaaggtttcaagtttt |
11829314 |
T |
|
| Q |
102 |
cgagttcactccaaaaactcactattgaaagatgtcaagaacttgatcttgaca |
155 |
Q |
| |
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|| |||||| | ||| |||||||||||||| || |||||| ||| |||| |
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|
| T |
11829315 |
taagctcactcatatcactttctattgaaagatgtgaacaacttgttctggaca |
11829368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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