View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11990_low_8 (Length: 426)
Name: NF11990_low_8
Description: NF11990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11990_low_8 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0164 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 97780 - 97372
Alignment:
| Q |
1 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97780 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
97681 |
T |
|
| Q |
99 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
97680 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattctgttgaagat |
97581 |
T |
|
| Q |
199 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
97580 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggt----gattacattcgaatttct |
97485 |
T |
|
| Q |
299 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97484 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcattcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
97385 |
T |
|
| Q |
399 |
ttcctactccggt |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
97384 |
ttcctactccggt |
97372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 13986137 - 13986545
Alignment:
| Q |
1 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13986137 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
13986236 |
T |
|
| Q |
99 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
13986237 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattctgttgaagat |
13986336 |
T |
|
| Q |
199 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13986337 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaagg----tgattacattcgaatttct |
13986432 |
T |
|
| Q |
299 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13986433 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcattcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
13986532 |
T |
|
| Q |
399 |
ttcctactccggt |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13986533 |
ttcctactccggt |
13986545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 48 - 402
Target Start/End: Original strand, 18252125 - 18252475
Alignment:
| Q |
48 |
gcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgg |
147 |
Q |
| |
|
|||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||| | ||| |||||||||| ||||||||| ||| |
|
|
| T |
18252125 |
gcgttctatgcgaagagctcttggagggaagaacaagtttgattttgtggatggatctattcctattccaacggattttgatccaaatttcaaagcttgg |
18252224 |
T |
|
| Q |
148 |
aatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttgga |
247 |
Q |
| |
|
||||||||||| ||||| || |||| ||||| ||||||||| |||||||||| |||||||| || ||| | ||||| || || ||||| ||||| |||| |
|
|
| T |
18252225 |
aatcgttgcaatatgctcgtgtattcttggattatgaattctgttgaagattcaattgcacaaagcattttttttctggaaaatgccattgatgtatgga |
18252324 |
T |
|
| Q |
248 |
atgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagttt |
347 |
Q |
| |
|
|||||||||| ||| | || || |||||||||| || ||||| || |||||||| ||||| ||||||||| | || || |||||||| ||||||||| |
|
|
| T |
18252325 |
atgaactcaaagaaagattctcccaaggtgatt--tt--attcgtatctctgaattacaatgtgaaatctttagtttgaaacaagattcacgttcagtta |
18252420 |
T |
|
| Q |
348 |
ctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcc |
402 |
Q |
| |
|
|| ||||||||| ||||||| || |||||||||| |||||||| |||||||| |
|
|
| T |
18252421 |
tagaatttttcactactttgaaagtgttatgggaagagcttgaagcttatcttcc |
18252475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 20246019 - 20245924
Alignment:
| Q |
70 |
ggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgctt |
165 |
Q |
| |
|
||||| ||||| ||||||||||| || |||| ||||||| ||| || |||| ||||||||| ||||||| || ||||||| ||||||||||||| |
|
|
| T |
20246019 |
ggaggtaagaataagtttgatttggtttatggttcaattctagtcccattggagtttgatccatgtttcaaggcttggaatcattgcaacatgctt |
20245924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 52771177 - 52771585
Alignment:
| Q |
1 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52771177 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
52771276 |
T |
|
| Q |
99 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
52771277 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattctgttgaagat |
52771376 |
T |
|
| Q |
199 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52771377 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaagg----tgattacattcgaatttct |
52771472 |
T |
|
| Q |
299 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52771473 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcattcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
52771572 |
T |
|
| Q |
399 |
ttcctactccggt |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52771573 |
ttcctactccggt |
52771585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 31197136 - 31196728
Alignment:
| Q |
1 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31197136 |
ccgtcactgttactccggtattgaacaactcaaactatcactattgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
31197037 |
T |
|
| Q |
99 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagat |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
31197036 |
tggatcaattccagttcttatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattctgttgaagat |
31196937 |
T |
|
| Q |
199 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31196936 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggt----gattacattcgaatttct |
31196841 |
T |
|
| Q |
299 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31196840 |
gaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatc |
31196741 |
T |
|
| Q |
399 |
ttcctactccggt |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31196740 |
ttcctactccggt |
31196728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 76 - 402
Target Start/End: Original strand, 53976323 - 53976645
Alignment:
| Q |
76 |
aagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcat |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||| | ||| |||||||||| |||||| || ||||||||||||||||||||||| |||| | |
|
|
| T |
53976323 |
aagaacaagtttgattttgtggatggatctatccctgttccaacggattttgatccaaatttcaaggcttggaatcgttgcaacatgcttgtgcattctt |
53976422 |
T |
|
| Q |
176 |
ggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaagg |
275 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| || ||||| || || || || ||||| ||||| |||||||||||||| ||| | || || ||||| |
|
|
| T |
53976423 |
ggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatgtatggaatgaactcaaagaaagattctcccaagg |
53976522 |
T |
|
| Q |
276 |
tgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttct |
375 |
Q |
| |
|
||||| |||||| || |||||||| ||||| ||||| ||| | || || |||||||| ||||||||| | || ||||||||||| ||||| || | |
|
|
| T |
53976523 |
tgattt----cattcgtatctctgaattacaatgtgaaatttttagtttgaaacaagattcacgttcagttacagaatttttcactgccttgaaagtctt |
53976618 |
T |
|
| Q |
376 |
atgggaagaacttgaagcatatcttcc |
402 |
Q |
| |
|
||||||||| |||||||| |||||||| |
|
|
| T |
53976619 |
atgggaagagcttgaagcttatcttcc |
53976645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 261
Target Start/End: Original strand, 39570763 - 39570937
Alignment:
| Q |
85 |
tttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatga |
184 |
Q |
| |
|
||||| ||||| |||||| ||||| |||||||||| || ||||||||||||| || || ||||||| |||||| ||| |||| |||||||||| |||| |
|
|
| T |
39570763 |
tttgactttgttgatggaacaatttcagttcctattgattttgatccaagtt--aaggcttggaatcattgcaatatgtttgtgcattcatggattatga |
39570860 |
T |
|
| Q |
185 |
attctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaa |
261 |
Q |
| |
|
||| | |||| || ||||||||| | | ||||||||| ||| ||| |||| ||||||||||| ||||| |||||| |
|
|
| T |
39570861 |
attttgttgatgaatctattgcataatgcattgtgttttttgtgaattccattgatgtttggaaggaactgaaggaa |
39570937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 37190477 - 37190528
Alignment:
| Q |
229 |
aacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgatt |
280 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| ||| |||||||||||| |
|
|
| T |
37190477 |
aacgccatggatgtgtggaatgatcttaaggaacgttttgctcaaggtgatt |
37190528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Complemental strand, 250895 - 250489
Alignment:
| Q |
3 |
gtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250895 |
gtcattgttactccggtattgaacaactcaaattatcacttttgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatg |
250796 |
T |
|
| Q |
101 |
gatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
250795 |
gatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtacattcatggatcatgaattctgttgaagattc |
250696 |
T |
|
| Q |
201 |
tattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
250695 |
tattgcacagagtattgtgtttcttgagaacgccattgatgtttggaatgaactcaaggaacgtttttctcaaggt----gattacattcgaatttctga |
250600 |
T |
|
| Q |
301 |
attgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250599 |
attgcaatgcgaaatctttggattaaagcaagattcgctttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatctt |
250500 |
T |
|
| Q |
401 |
cctactccggt |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
250499 |
cctactccggt |
250489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Original strand, 16254669 - 16255075
Alignment:
| Q |
3 |
gtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16254669 |
gtcattgttactccggtattgaacaactcaaattatcactcttgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatg |
16254768 |
T |
|
| Q |
101 |
gatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
16254769 |
gatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgtaacatgcttgtgcattcatggatcatgaattctgttgaagattc |
16254868 |
T |
|
| Q |
201 |
tattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
16254869 |
tattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacggttttctcaagg----tgattacattcgtatttctga |
16254964 |
T |
|
| Q |
301 |
attgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatctt |
400 |
Q |
| |
|
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16254965 |
attacaatgtgaaatctttggattgaagcaagattcgcgttcagtttctgagtttttcactgcattgaaggttctatgggaagaacttgaagcatatctt |
16255064 |
T |
|
| Q |
401 |
cctactccggt |
411 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16255065 |
cccactccggt |
16255075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 26129389 - 26129630
Alignment:
| Q |
3 |
gtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26129389 |
gtcattgttactccggtattgaacaactcaaattatcactcttgggcgcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatg |
26129488 |
T |
|
| Q |
101 |
gatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26129489 |
gatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgtaacatgcttgtgcattcatggatcatgaattctgttgaagattc |
26129588 |
T |
|
| Q |
201 |
tattgcacagagtattgtgtttcttgagaacgccatggatgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26129589 |
tattgcacagagtattgtgtttcttgagaacgccatggatgt |
26129630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 239 - 411
Target Start/End: Original strand, 26131827 - 26131995
Alignment:
| Q |
239 |
atgtttggaatgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgc |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
26131827 |
atgtttggaatgaactcaaggaacggttttctcaaggtgat----tacattcgtatttctgaattacaatgcgaaatctttggattgaagcaagattcgc |
26131922 |
T |
|
| Q |
339 |
gttcagtttctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcctactccggt |
411 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26131923 |
gttcagtttctgagtttttcactacattgaaggttctatgggaagaacttgaagcatatcttcccactccggt |
26131995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 29155693 - 29155429
Alignment:
| Q |
1 |
ccgtcactgttactccggtattgaacaactcaaactatcactcttgggcg--ttcaatgagaagagctttaggaggaaagaacaagtttgattttgtgga |
98 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | ||||| || |||||| ||||||| ||||||| |||||||||||||| || || |||||||| || |
|
|
| T |
29155693 |
ccgtcaccattactccggtattgaataactccagttatcattcatgggcgcgttcaatgcgaagagccttaggaggaaagaataaattcgattttgttga |
29155594 |
T |
|
| Q |
99 |
tggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagat |
198 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||| |||| ||||||||||||| | || ||||| |
|
|
| T |
29155593 |
tggatcaattccagttcctactgaatttgatcctagtttcaaggcgtgaaatcgttgcaacatgcttgtgcattcttggatcatgaattttgttcaagat |
29155494 |
T |
|
| Q |
199 |
tctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaacg |
263 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
29155493 |
tcaattgcacagagcattgtttttcttgagaatgttatggatgtttggaacgaactcaaggaacg |
29155429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 15307601 - 15307553
Alignment:
| Q |
229 |
aacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtg |
277 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
15307601 |
aacgccatggatgtgtggaatgatctcaaagaacgtttttctcaaggtg |
15307553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 15312895 - 15312847
Alignment:
| Q |
229 |
aacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtg |
277 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
15312895 |
aacgccatggatgtgtggaatgatctcaaagaacgtttttctcaaggtg |
15312847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 33458040 - 33458091
Alignment:
| Q |
229 |
aacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgatt |
280 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| ||| |||||||||||| |
|
|
| T |
33458040 |
aacgccatggatgtgtggaatgatcttaaggaacgttttgctcaaggtgatt |
33458091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 34822198 - 34822249
Alignment:
| Q |
229 |
aacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgatt |
280 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| ||| |||||||||||| |
|
|
| T |
34822198 |
aacgccatggatgtgtggaatgatcttaaggaacgttttgctcaaggtgatt |
34822249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 49 - 403
Target Start/End: Complemental strand, 20044769 - 20044419
Alignment:
| Q |
49 |
cgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgga |
148 |
Q |
| |
|
||||| ||| |||||||||| |||| |||||||| || ||||| || |||||||| ||||| ||||| | ||| |||||||| |||||||| || |||| |
|
|
| T |
20044769 |
cgttcgatgcgaagagctttgggagcgaagaacaaattcgatttcgttgatggatccattccggttcccacggagtttgatcctagtttcaaggcgtgga |
20044670 |
T |
|
| Q |
149 |
atcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaa |
248 |
Q |
| |
|
| |||||||||||| | | | || ||||||||||||||| ||||| | | |||||||| |||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
20044669 |
accgttgcaacatgttaatccactcctggatcatgaattctgttgaaactccaattgcacaaagtattgtttttctagataacgcaattgatgtttggaa |
20044570 |
T |
|
| Q |
249 |
tgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagtttc |
348 |
Q |
| |
|
|||||||| ||| | ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
20044569 |
cgaactcaaagaatgtttttcacaagg----agattacattcggatttctgaattgcagtgtgaaatctttggtttgaagcaagattcgcgttcggtttc |
20044474 |
T |
|
| Q |
349 |
tgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcct |
403 |
Q |
| |
|
||| || || ||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
20044473 |
tgaattctttactgctttgaaggttctttgggaagaacttgaagcttatcttcct |
20044419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 31187094 - 31187206
Alignment:
| Q |
55 |
atgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgtt |
154 |
Q |
| |
|
|||||| ||||||| |||| ||||||||| ||||||||||| ||||| || || | ||| ||| || ||||||||||||||||| | |||||||| | |
|
|
| T |
31187094 |
atgagacgagcttttggagcaaagaacaaatttgattttgttgatggttctatacatgtttctacggggtttgatccaagtttcaagtcttggaatcgct |
31187193 |
T |
|
| Q |
155 |
gcaacatgcttgt |
167 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
31187194 |
gcaatatgcttgt |
31187206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 31195154 - 31195266
Alignment:
| Q |
55 |
atgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgtt |
154 |
Q |
| |
|
|||||| ||||||| |||| ||||||||| ||||||||||| ||||| || || | ||| ||| || ||||||||||||||||| | |||||||| | |
|
|
| T |
31195154 |
atgagacgagcttttggagcaaagaacaaatttgattttgttgatggttctatacatgtttctacggggtttgatccaagtttcaagtcttggaatcgct |
31195253 |
T |
|
| Q |
155 |
gcaacatgcttgt |
167 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
31195254 |
gcaatatgcttgt |
31195266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 31213769 - 31213881
Alignment:
| Q |
55 |
atgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatggaatcgtt |
154 |
Q |
| |
|
|||||| ||||||| |||| ||||||||| ||||||||||| ||||| || || | ||| ||| || ||||||||||||||||| | |||||||| | |
|
|
| T |
31213769 |
atgagacgagcttttggagcaaagaacaaatttgattttgttgatggttctatacatgtttctacggggtttgatccaagtttcaagtcttggaatcgct |
31213868 |
T |
|
| Q |
155 |
gcaacatgcttgt |
167 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
31213869 |
gcaatatgcttgt |
31213881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 18503222 - 18503180
Alignment:
| Q |
238 |
gatgtttggaatgaactcaaggaacggttttctcaaggtgatt |
280 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
18503222 |
gatgtttggaatgatctaaaggaacgattttctcaaggtgatt |
18503180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 26363280 - 26363238
Alignment:
| Q |
238 |
gatgtttggaatgaactcaaggaacggttttctcaaggtgatt |
280 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
26363280 |
gatgtttggaatgatctgaaggaacgattttctcaaggtgatt |
26363238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 48 - 402
Target Start/End: Complemental strand, 29077 - 28727
Alignment:
| Q |
48 |
gcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgg |
147 |
Q |
| |
|
|||||| ||| |||||||| | |||| ||||||||||||||||||||||||||||| || || ||||| | ||| |||||||||| ||||| || ||| |
|
|
| T |
29077 |
gcgttctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacggattttgatccaaacttcaaggcttgg |
28978 |
T |
|
| Q |
148 |
aatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttgga |
247 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||| |||||||||| |||||||| || ||||| || || || || ||||| ||||| |||| |
|
|
| T |
28977 |
aatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatgtatgga |
28878 |
T |
|
| Q |
248 |
atgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagttt |
347 |
Q |
| |
|
|||||||||| || | || || |||||||||| || ||||| || |||||||| ||||| ||||| ||| | || || |||||||| ||||||||| |
|
|
| T |
28877 |
atgaactcaaagagagattctcccaaggtgatt--tt--attcgtatctctgaattacaatgtgaaatttttagtttgaaacaagattcacgttcagtta |
28782 |
T |
|
| Q |
348 |
ctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcc |
402 |
Q |
| |
|
| || ||||||||||| ||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
28781 |
cagaatttttcactgccttgaaagttctatgggaagagcttgaagcttatcttcc |
28727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 48 - 402
Target Start/End: Complemental strand, 18697 - 18347
Alignment:
| Q |
48 |
gcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgg |
147 |
Q |
| |
|
|||||| ||| |||||||| | |||| ||||||||||||||||||||||||||||| || || ||||| | || |||||||||| |||||| || ||| |
|
|
| T |
18697 |
gcgttctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaactgattttgatccaaatttcaaggcttgg |
18598 |
T |
|
| Q |
148 |
aatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttgga |
247 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||| |||||||||| |||||||| || ||||| || || || || ||||| ||||| |||| |
|
|
| T |
18597 |
aatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatgtatgga |
18498 |
T |
|
| Q |
248 |
atgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagttt |
347 |
Q |
| |
|
|||||||||| || | || || ||||| ||||| |||||| || |||||||| || || ||||| ||| | || || |||||||| ||||||||| |
|
|
| T |
18497 |
atgaactcaaagatagattctcccaagg----tgatttcattcgtatctctgaattacagtgtgaaatttttagtttgaaacaagattcacgttcagtta |
18402 |
T |
|
| Q |
348 |
ctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcc |
402 |
Q |
| |
|
| || ||||||||||| ||||| || |||||||||| |||||||| |||||||| |
|
|
| T |
18401 |
cagaatttttcactgccttgaaagtcttatgggaagagcttgaagcttatcttcc |
18347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 402
Target Start/End: Original strand, 15191277 - 15191627
Alignment:
| Q |
48 |
gcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgg |
147 |
Q |
| |
|
|||||| ||| |||||||| | |||| ||||||||||||||||||||||||||||| || || ||||| | || |||||||||| |||||| || ||| |
|
|
| T |
15191277 |
gcgttctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacagattttgatccaaatttcaaggcttgg |
15191376 |
T |
|
| Q |
148 |
aatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttgga |
247 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||| |||||||||| |||||||| || ||||| || || || || ||||| ||||| |||| |
|
|
| T |
15191377 |
aatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctggaaaatgccattgatgtatgga |
15191476 |
T |
|
| Q |
248 |
atgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagttt |
347 |
Q |
| |
|
|||||||||| || | || || ||||| ||||| |||||| || |||||||| || || ||||| ||| | || || |||||||| ||||||||| |
|
|
| T |
15191477 |
atgaactcaaagagagattctcccaagg----tgatttcattcgtatctctgaattacagtgtgaaatttttagtttgaaacaagattcacgttcagtta |
15191572 |
T |
|
| Q |
348 |
ctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcc |
402 |
Q |
| |
|
| || ||||||||||| ||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
15191573 |
cagaatttttcactgccttgaaagttctatgggaagagcttgaagcttatcttcc |
15191627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 2994903 - 2994954
Alignment:
| Q |
229 |
aacgccatggatgtttggaatgaactcaaggaacggttttctcaaggtgatt |
280 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||| |||||||||||| |
|
|
| T |
2994903 |
aacgccatggatgtgtggaatgatcttaaggaacggtttgctcaaggtgatt |
2994954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 402
Target Start/End: Complemental strand, 49643005 - 49642655
Alignment:
| Q |
48 |
gcgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgg |
147 |
Q |
| |
|
|||||| ||| |||||||| | |||| ||||||||||||||||||||||||||||| || || ||||| | ||| |||||||||| |||||| || ||| |
|
|
| T |
49643005 |
gcgttctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttccaacggattttgatccaaatttcaaggcttgg |
49642906 |
T |
|
| Q |
148 |
aatcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttgga |
247 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||| |||||||||| |||||||| || ||||| || || | || ||||| ||||| |||| |
|
|
| T |
49642905 |
aatcgttgcaacatgcttgtgcattcttggattatgaattctgttgaagattcaattgcacaaagcattgttttcctgaaaaatgccattgatgtatgga |
49642806 |
T |
|
| Q |
248 |
atgaactcaaggaacggttttctcaaggtgattgattacattcgaatttctgaattgcaatgcgaaatctttggattaaagcaagattcgcgttcagttt |
347 |
Q |
| |
|
|||||||||| ||| | || || |||| ||||| |||||| ||||||||||| ||||| ||||| ||| | || || |||||||| ||||||||| |
|
|
| T |
49642805 |
atgaactcaaagaaagattctcctaagg----tgatttcattcgtatttctgaattacaatgtgaaatttttagtttgaaacaagattcacgttcagtta |
49642710 |
T |
|
| Q |
348 |
ctgagtttttcactgctttgaaggttctatgggaagaacttgaagcatatcttcc |
402 |
Q |
| |
|
| || ||||||||||| ||||| || |||||||||| |||||||| |||||||| |
|
|
| T |
49642709 |
cagaatttttcactgccttgaaagtcttatgggaagagcttgaagcttatcttcc |
49642655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 275
Target Start/End: Original strand, 51589571 - 51589797
Alignment:
| Q |
49 |
cgttcaatgagaagagctttaggaggaaagaacaagtttgattttgtggatggatcaattccagttcctatggaatttgatccaagtttcaaagcatgga |
148 |
Q |
| |
|
||||| ||| ||||||| || |||| |||||||| || ||||| || |||||||| ||||| ||||| ||||| |||||||| |||||||| || |||| |
|
|
| T |
51589571 |
cgttcgatgtgaagagcgttgggagcgaagaacaaattcgatttcgttgatggatccattccggttcccatggagtttgatcctagtttcaaggcgtgga |
51589670 |
T |
|
| Q |
149 |
atcgttgcaacatgcttgtaaattcatggatcatgaattctattgaagattctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaa |
248 |
Q |
| |
|
| || ||||||||| | | | || ||||||||||||||| ||||| ||| ||||| || |||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
51589671 |
accgctgcaacatgttaatccactcctggatcatgaattctgttgaaacttcaattgcgcaaagtattgtttttctggataacgcaattgatgtttggaa |
51589770 |
T |
|
| Q |
249 |
tgaactcaaggaacggttttctcaagg |
275 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |
|
|
| T |
51589771 |
cgaactcaaagaacgtttttcacaagg |
51589797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 9798746 - 9798682
Alignment:
| Q |
124 |
tttgatccaagtttcaaagcatggaatcgttgcaacatgcttgtaaattcatggatcatgaattc |
188 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||||||||| | |||| |||||||||||||| |
|
|
| T |
9798746 |
tttgatccaagttttaaggcttggaatcagtgcaacatgcttattcattcgtggatcatgaattc |
9798682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 36010141 - 36010079
Alignment:
| Q |
200 |
ctattgcacagagtattgtgtttcttgagaacgccatggatgtttggaatgaactcaaggaac |
262 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || || || |||||||| || ||||| |||| |
|
|
| T |
36010141 |
ctattgcacagactattgtgtttcttgagaatgctattgacgtttggaaagatctcaaagaac |
36010079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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