View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11991_low_3 (Length: 444)
Name: NF11991_low_3
Description: NF11991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11991_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 24285701 - 24286132
Alignment:
| Q |
1 |
agcaaagggttccaagtgctgaaatacttgcagatattgctgctcattgcaatgatagaaagctagctagtaaaattgttaaggattcctgtgagagact |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24285701 |
agcatagggttccaagtgctgaaatacttgcagatattgctgctcattgcaatgatagaaagctagctagtaaatatgttaaggattcctgtgagagact |
24285800 |
T |
|
| Q |
101 |
ttacatgtggtttctcctgaagcagcagaaggtacagctttaatgattattattttaatatgcgtccttctttcatgatgcttttatattatttagtttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24285801 |
ttacatgtggtttctcctgaagcagcagaaggtacagctttaatgatcattattttaatatgcgtccttctttcatgatgcttttatattatttagtttt |
24285900 |
T |
|
| Q |
201 |
tggtaaaaattaacttttttaattggtgtaactgattactgttgaaaacaatggttttctattattgattttaatttaatgattttgtaatcattaaaca |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
24285901 |
tggtaaaa-ttaacttttttaattggtgtaactgattacagttgaatacaatggttttctattattgattttaatttaatgattttgtattcattataca |
24285999 |
T |
|
| Q |
301 |
cattcttgctgtgttagcttttttcctctgatacatgatttatctttttgaagtttctgctaattttacctatatttttgttctattaaaagtgagcatg |
400 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24286000 |
cattcttgctgtgtttgcttttttcctctgatacatgatttatctttttgaagtttctgctaattttacctttatttttgttctattaaaagtgagcatg |
24286099 |
T |
|
| Q |
401 |
cttaaaatttgtgttcggtctggatttgatgtcc |
434 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
24286100 |
cttaaaatttgtgttcggtct-gatttgatgtcc |
24286132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 24376520 - 24376089
Alignment:
| Q |
1 |
agcaaagggttccaagtgctgaaatacttgcagatattgctgctcattgcaatgatagaaagctagctagtaaaattgttaaggattcctgtgagagact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
24376520 |
agcatagggttccaagtgctgaaatacttgcagatattgctgctcattgcaatgatagaaagctagctagtaaatatgttaaggattcctgtgagagact |
24376421 |
T |
|
| Q |
101 |
ttacatgtggtttctcctgaagcagcagaaggtacagctttaatgattattattttaatatgcgtccttctttcatgatgcttttatattatttagtttt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24376420 |
ttacatgtggtttctcctgaagcagcagaaggtacagctttaatgatcattattttaatatgcgtccttctttcatgatgcttttatattatttagtttt |
24376321 |
T |
|
| Q |
201 |
tggtaaaaattaacttttttaattggtgtaactgattactgttgaaaacaatggttttctattattgattttaatttaatgattttgtaatcattaaaca |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
24376320 |
tggtaaaaattaact-ttttaattggtgtaactgattacagttgaatacaatggttttctattattgattttaatttaatgattttgtattcattataca |
24376222 |
T |
|
| Q |
301 |
cattcttgctgtgttagcttttttcctctgatacatgatttatctttttgaagtttctgctaattttacctatatttttgttctattaaaagtgagcatg |
400 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24376221 |
cattcttgctgtgtttgcttttttcctctgatacatgatttatctttttgaagtttctgctaattttacctttatttttgttctattaaaagtgagcatg |
24376122 |
T |
|
| Q |
401 |
cttaaaatttgtgttcggtctggatttgatgtcc |
434 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
24376121 |
cttaaaatttgtgttcggtct-gatttgatgtcc |
24376089 |
T |
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