View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11991_low_4 (Length: 437)

Name: NF11991_low_4
Description: NF11991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11991_low_4
NF11991_low_4
[»] chr1 (9 HSPs)
chr1 (159-425)||(7075674-7075952)
chr1 (18-127)||(7075525-7075640)
chr1 (18-57)||(16451577-16451616)
chr1 (18-57)||(16460730-16460769)
chr1 (18-58)||(50333880-50333920)
chr1 (99-131)||(26760113-26760145)
chr1 (99-131)||(26924389-26924421)
chr1 (18-50)||(27932962-27932994)
chr1 (18-54)||(52382510-52382546)
[»] chr6 (4 HSPs)
chr6 (18-61)||(8232432-8232475)
chr6 (18-58)||(3166230-3166270)
chr6 (98-127)||(34803825-34803854)
chr6 (18-46)||(34441849-34441877)
[»] chr8 (7 HSPs)
chr8 (18-59)||(29638245-29638286)
chr8 (18-58)||(14117407-14117447)
chr8 (18-58)||(28791253-28791293)
chr8 (18-61)||(32678977-32679020)
chr8 (18-55)||(25267179-25267216)
chr8 (98-131)||(26570277-26570310)
chr8 (99-131)||(13085070-13085102)
[»] chr7 (9 HSPs)
chr7 (18-55)||(2849203-2849240)
chr7 (18-57)||(30659602-30659641)
chr7 (98-131)||(27621790-27621823)
chr7 (25-61)||(45218254-45218290)
chr7 (87-129)||(32345558-32345600)
chr7 (87-129)||(32972377-32972419)
chr7 (18-54)||(18731391-18731427)
chr7 (22-58)||(24288366-24288402)
chr7 (93-129)||(48981337-48981373)
[»] chr5 (7 HSPs)
chr5 (92-128)||(38978714-38978750)
chr5 (161-192)||(4194533-4194564)
chr5 (18-57)||(16954621-16954660)
chr5 (99-134)||(39035975-39036010)
chr5 (98-131)||(14184168-14184201)
chr5 (18-50)||(5072905-5072937)
chr5 (18-50)||(10044622-10044654)
[»] chr4 (8 HSPs)
chr4 (18-58)||(29550849-29550889)
chr4 (18-58)||(28279782-28279822)
chr4 (18-58)||(44633101-44633141)
chr4 (18-61)||(49401598-49401641)
chr4 (98-127)||(19688276-19688305)
chr4 (98-131)||(47386115-47386148)
chr4 (98-131)||(55360468-55360501)
chr4 (18-50)||(37316044-37316076)
[»] chr2 (12 HSPs)
chr2 (18-58)||(24356056-24356096)
chr2 (86-129)||(13375580-13375623)
chr2 (18-55)||(1908616-1908653)
chr2 (18-54)||(43182223-43182259)
chr2 (18-57)||(7931618-7931657)
chr2 (18-57)||(28844003-28844042)
chr2 (18-50)||(314388-314420)
chr2 (98-134)||(7213428-7213464)
chr2 (18-58)||(36748087-36748127)
chr2 (18-58)||(38282547-38282587)
chr2 (18-58)||(39807154-39807194)
chr2 (97-129)||(43427480-43427512)
[»] scaffold0155 (1 HSPs)
scaffold0155 (98-127)||(8072-8101)
[»] chr3 (4 HSPs)
chr3 (18-55)||(48409532-48409569)
chr3 (18-50)||(8498208-8498240)
chr3 (18-50)||(41286998-41287030)
chr3 (18-54)||(53050975-53051011)
[»] scaffold0685 (1 HSPs)
scaffold0685 (18-54)||(6523-6559)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 159 - 425
Target Start/End: Original strand, 7075674 - 7075952
Alignment:
Q  159 attggctcagttattatgggacgagggagtactaatttttctatacttcctacgtgttggttgc----------gctcataaaaaacaaagaaaaggggt 248  Q
    |||| |||||||||||||  ||| || |||||||||||||||||||||| ||||||||||||||          ||||||||||||||||||||||||||    
T  7075674 attgactcagttattatgaaacg-ggaagtactaatttttctatacttc-tacgtgttggttgcttttgttttagctcataaaaaacaaagaaaaggggt 7075771  T
Q  249 tgaaaggttaaccaatcatcaatcttagcatattatcttgccatatttcatttctcgaaaaaatatatc----tcctaacctctttgggtggatatgtcc 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  7075772 tgaaaggttaaccaatcatcaatcttagcatattatcttgccatatatcatttctcgaaaaaatatatcattttcctaacctctttgggtggatatgtcc 7075871  T
Q  345 aaccacacaaaacatagggtcctcggactgcatatggcaagtacatctttttcgttcttggacttgtcattgatgtctctg 425  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7075872 aaccacacaaaacatagggtcctgggactgcatatgacaagtacatctttttcgttcttggacttgtcattgatgtctctg 7075952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 7075525 - 7075640
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttgagattannnnnnnnacaaacgggtc------actgggacggagggagtaattgatattg 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||        ||||| |||||      ||||| ||||||||||||||| ||||||    
T  7075525 attaatgttgtattgaaaagtgaaatgggtcaagattcttgagactattttttttacaaatgggtcggttaaactggaacggagggagtaatttatattg 7075624  T
Q  112 tattgaaaagtgaaat 127  Q
    ||||||||||||||||    
T  7075625 tattgaaaagtgaaat 7075640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 16451616 - 16451577
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattctt 57  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  16451616 attaatgttgtattgaaaagtgaaatgggtcaagattctt 16451577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 16460769 - 16460730
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattctt 57  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  16460769 attaatgttgtattgaaaagtgaaatgggtcaagattctt 16460730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 50333920 - 50333880
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  50333920 attaatgttatattggaaagtgaaatggatcaagattcttg 50333880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 26760145 - 26760113
Alignment:
Q  99 gtaattgatattgtattgaaaagtgaaatgaat 131  Q
    |||||| ||||||||||||||||||||||||||    
T  26760145 gtaattaatattgtattgaaaagtgaaatgaat 26760113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 26924389 - 26924421
Alignment:
Q  99 gtaattgatattgtattgaaaagtgaaatgaat 131  Q
    |||||| ||||||||||||||||||||||||||    
T  26924389 gtaattaatattgtattgaaaagtgaaatgaat 26924421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 27932962 - 27932994
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||||| ||||||||||||||||||||||||||    
T  27932962 attaatattgtattgaaaagtgaaatggatcaa 27932994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 52382510 - 52382546
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagatt 54  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  52382510 attaatgttgtattgaaaattgaaatgggtcaagatt 52382546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 8232432 - 8232475
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttgaga 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8232432 attaatgttgtattgaaaagtgaaatggatcaagattcttgaga 8232475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3166230 - 3166270
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  3166230 attaatgttgtattgaaaattgaaatggatcaagattcttg 3166270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 34803825 - 34803854
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaat 127  Q
    ||||||||||||||||||||||||||||||    
T  34803825 agtaattgatattgtattgaaaagtgaaat 34803854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 34441877 - 34441849
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatgga 46  Q
    |||||||||||||||||||||||||||||    
T  34441877 attaatgttgtattgaaaagtgaaatgga 34441849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 29638286 - 29638245
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttga 59  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  29638286 attaatgttgtattgaaaagtgaaatgggtcaagattcttga 29638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 14117447 - 14117407
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  14117447 attaatgttgtattgaaaagtgaaatgagtcaagattcttg 14117407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 28791293 - 28791253
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  28791293 attaatgttgcattgaaaagtgaaatgggtcaagattcttg 28791253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 32679020 - 32678977
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttgaga 61  Q
    |||||||||||||||||||||||||||| | |||||| ||||||    
T  32679020 attaatgttgtattgaaaagtgaaatgggtgaagatttttgaga 32678977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 25267179 - 25267216
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattc 55  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  25267179 attaatgttgtattgaaaactgaaatgggtcaagattc 25267216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 26570277 - 26570310
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaatgaat 131  Q
    ||||||| ||||||||||||||||||||||||||    
T  26570277 agtaattaatattgtattgaaaagtgaaatgaat 26570310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 13085070 - 13085102
Alignment:
Q  99 gtaattgatattgtattgaaaagtgaaatgaat 131  Q
    |||||| ||||||||||||||||||||||||||    
T  13085070 gtaattaatattgtattgaaaagtgaaatgaat 13085102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2849240 - 2849203
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattc 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2849240 attaatgttgtattgaaaagtgaaatggatcaagattc 2849203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 30659602 - 30659641
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattctt 57  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30659602 attaatgttgtattgaaaagtgaaatgggtcaagattctt 30659641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 27621823 - 27621790
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaatgaat 131  Q
    ||||||||||||||||||||||||||||||||||    
T  27621823 agtaattgatattgtattgaaaagtgaaatgaat 27621790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 45218254 - 45218290
Alignment:
Q  25 ttgtattgaaaagtgaaatggatcaagattcttgaga 61  Q
    ||||||||||||||||||||| |||||||||||||||    
T  45218254 ttgtattgaaaagtgaaatgggtcaagattcttgaga 45218290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 32345600 - 32345558
Alignment:
Q  87 gggacggagggagtaattgatattgtattgaaaagtgaaatga 129  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||    
T  32345600 gggacggatggagtaattaatattgtattgaaaagtcaaatga 32345558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 32972377 - 32972419
Alignment:
Q  87 gggacggagggagtaattgatattgtattgaaaagtgaaatga 129  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||    
T  32972377 gggagggagggagtaattaatattgtattggaaagtgaaatga 32972419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 18731427 - 18731391
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagatt 54  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  18731427 attaatgttgtattggaaactgaaatggatcaagatt 18731391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 24288402 - 24288366
Alignment:
Q  22 atgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  24288402 atgttgcattgaaaagtgaaatgggtcaagattcttg 24288366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 48981373 - 48981337
Alignment:
Q  93 gagggagtaattgatattgtattgaaaagtgaaatga 129  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  48981373 gaggaagtaattaatattgtattgaaaagtgaaatga 48981337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 38978750 - 38978714
Alignment:
Q  92 ggagggagtaattgatattgtattgaaaagtgaaatg 128  Q
    |||||||||||||||||||||||||||||||||||||    
T  38978750 ggagggagtaattgatattgtattgaaaagtgaaatg 38978714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 192
Target Start/End: Complemental strand, 4194564 - 4194533
Alignment:
Q  161 tggctcagttattatgggacgagggagtacta 192  Q
    ||||||||||||||||||||||||||||||||    
T  4194564 tggctcagttattatgggacgagggagtacta 4194533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 16954660 - 16954621
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattctt 57  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  16954660 attaatgttgtattgtaaaatgaaatggatcaagattctt 16954621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 39035975 - 39036010
Alignment:
Q  99 gtaattgatattgtattgaaaagtgaaatgaattaa 134  Q
    |||||| |||||||||||||||||||||||||||||    
T  39035975 gtaattaatattgtattgaaaagtgaaatgaattaa 39036010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 14184168 - 14184201
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaatgaat 131  Q
    ||||||| ||||||||||||||||||||||||||    
T  14184168 agtaattaatattgtattgaaaagtgaaatgaat 14184201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 5072937 - 5072905
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||| ||||||||||||||||||||||||||||    
T  5072937 attattgttgtattgaaaagtgaaatggatcaa 5072905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 10044654 - 10044622
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||||||||||||||||||||||||| ||||||    
T  10044654 attaatgttgtattgaaaagtgaaattgatcaa 10044622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 29550849 - 29550889
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  29550849 attaatgttgtattgaaaagtgaaatgggtcaagattcttg 29550889  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 28279822 - 28279782
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  28279822 attaatgttgtattgaaaagtgaaatgagtcaagattcttg 28279782  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 44633141 - 44633101
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  44633141 attaatgttgtattgaaaagtgaaatgagtcaagattcttg 44633101  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 49401641 - 49401598
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttgaga 61  Q
    |||||||||| |||||||||| |||||| |||||||||||||||    
T  49401641 attaatgttgcattgaaaagtaaaatgggtcaagattcttgaga 49401598  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 19688305 - 19688276
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaat 127  Q
    ||||||||||||||||||||||||||||||    
T  19688305 agtaattgatattgtattgaaaagtgaaat 19688276  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 47386148 - 47386115
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaatgaat 131  Q
    ||||||| ||||||||||||||||||||||||||    
T  47386148 agtaattaatattgtattgaaaagtgaaatgaat 47386115  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 55360468 - 55360501
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaatgaat 131  Q
    ||||||| ||||||||||||||||||||||||||    
T  55360468 agtaattaatattgtattgaaaagtgaaatgaat 55360501  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 37316044 - 37316076
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||||| ||||||||||||||||||||||||||    
T  37316044 attaatattgtattgaaaagtgaaatggatcaa 37316076  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 24356096 - 24356056
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  24356096 attaatgttgtattgaaaagtgaaatgggtcaagattcttg 24356056  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 13375580 - 13375623
Alignment:
Q  86 tgggacggagggagtaattgatattgtattgaaaagtgaaatga 129  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  13375580 tgggacggaggaagtaattaatattgtattgaaaagtgaaatga 13375623  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 1908616 - 1908653
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattc 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1908616 attaatgttgtattgaaaattgaaatggatcaagattc 1908653  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 43182259 - 43182223
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagatt 54  Q
    ||||||||||||||||||| |||||||||||||||||    
T  43182259 attaatgttgtattgaaaattgaaatggatcaagatt 43182223  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 7931618 - 7931657
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattctt 57  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  7931618 attaatgttgtattgaaaagtgaaatgggtcaaaattctt 7931657  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 28844042 - 28844003
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattctt 57  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  28844042 attaatgttgtattgaaaactgaaatggatcaaaattctt 28844003  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 314420 - 314388
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||||| ||||||||||||||||||||||||||    
T  314420 attaatattgtattgaaaagtgaaatggatcaa 314388  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 7213464 - 7213428
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaatgaattaa 134  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  7213464 agtaattaatattgtattgaaaagtgaaatgatttaa 7213428  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36748127 - 36748087
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    ||||||| || ||| ||||||||||||||||||||||||||    
T  36748127 attaatgctgcattaaaaagtgaaatggatcaagattcttg 36748087  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 38282547 - 38282587
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    |||||||||||||| |||||||| ||| |||||||||||||    
T  38282547 attaatgttgtattaaaaagtgagatgaatcaagattcttg 38282587  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 39807194 - 39807154
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattcttg 58  Q
    ||||||||| |||| |||||||||||||||||| |||||||    
T  39807194 attaatgttctattaaaaagtgaaatggatcaatattcttg 39807154  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 43427480 - 43427512
Alignment:
Q  97 gagtaattgatattgtattgaaaagtgaaatga 129  Q
    |||||||| ||||||||||||||||||||||||    
T  43427480 gagtaattaatattgtattgaaaagtgaaatga 43427512  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 8072 - 8101
Alignment:
Q  98 agtaattgatattgtattgaaaagtgaaat 127  Q
    ||||||||||||||||||||||||||||||    
T  8072 agtaattgatattgtattgaaaagtgaaat 8101  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 48409569 - 48409532
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagattc 55  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  48409569 attaatgttgtattgaaaactgaaatgggtcaagattc 48409532  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 8498240 - 8498208
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||||| ||||||||||||||||||||||||||    
T  8498240 attaatattgtattgaaaagtgaaatggatcaa 8498208  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 41287030 - 41286998
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaa 50  Q
    |||||| ||||||||||||||||||||||||||    
T  41287030 attaatattgtattgaaaagtgaaatggatcaa 41286998  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 53051011 - 53050975
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagatt 54  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  53051011 attaatattgcattgaaaagtgaaatggatcaagatt 53050975  T

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Target: scaffold0685 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 6523 - 6559
Alignment:
Q  18 attaatgttgtattgaaaagtgaaatggatcaagatt 54  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  6523 attaatgttgtattgaaaattgaaatgggtcaagatt 6559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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