View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11992_high_11 (Length: 429)
Name: NF11992_high_11
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11992_high_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 76 - 429
Target Start/End: Complemental strand, 36686698 - 36686344
Alignment:
| Q |
76 |
tatgaaccaggttaagaagatgaagaaggaaatggtcacaatcacaaagattattaagtaaaattgaatcatcactatggtaagaaaatcaatgataaga |
175 |
Q |
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| T |
36686698 |
tatgaacaaggttaagaagatgaagaaggaaatggtcacaatcacaaagattattaagtaaaattgaatcatcacaatggtaagaaagttattgataaga |
36686599 |
T |
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| Q |
176 |
ttcaaacatgttaaatgacttatagggcaagaaatcaaatttggcccgannnnnnnnn-aatggaaaatcgcaaattcgcttaaaatcagacgagtttat |
274 |
Q |
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| T |
36686598 |
ttcaaacatgttaaatgacttatagggcaagaaatcaaatttggccagattttttttttaatggaaaatcgcaaattcgcttaaaatcagacgagttaat |
36686499 |
T |
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| Q |
275 |
ccgatttcttcaattttgtcgctagttgaatcggtcaaattcggtgccagcttcgatttcactataaaacaagtttatcatgaaatcaacaccaaacaca |
374 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
36686498 |
ccgatttcctcaattttgtcgctagttgaatcggtcaaattcggtgccagcttcgatttcactataaaacaagtttatcatcaaatcaacactaaacaca |
36686399 |
T |
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| Q |
375 |
aacctaaaaacgtaaatttagacgagattacgggtcaacaatagattttgaaaac |
429 |
Q |
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| T |
36686398 |
aacctaaaaacgtaaatttagacgagattacgggtcaacaatagagtttgaaaac |
36686344 |
T |
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