View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11992_high_26 (Length: 301)

Name: NF11992_high_26
Description: NF11992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11992_high_26
NF11992_high_26
[»] chr4 (12 HSPs)
chr4 (65-249)||(36507687-36507871)
chr4 (245-301)||(36507951-36508007)
chr4 (17-65)||(6034179-6034227)
chr4 (17-65)||(48182966-48183014)
chr4 (16-65)||(53352491-53352540)
chr4 (17-64)||(41236482-41236529)
chr4 (16-64)||(11511381-11511428)
chr4 (16-64)||(23608369-23608417)
chr4 (16-60)||(41824016-41824060)
chr4 (17-64)||(24995025-24995072)
chr4 (26-64)||(29234173-29234211)
chr4 (19-64)||(42044285-42044330)
[»] chr8 (14 HSPs)
chr8 (17-64)||(12831182-12831229)
chr8 (17-66)||(44507004-44507052)
chr8 (17-64)||(504039-504086)
chr8 (17-64)||(23122515-23122562)
chr8 (17-64)||(34012214-34012261)
chr8 (17-65)||(9122320-9122368)
chr8 (16-64)||(15197467-15197515)
chr8 (16-60)||(40423865-40423909)
chr8 (17-60)||(8841354-8841397)
chr8 (17-64)||(14548057-14548104)
chr8 (17-60)||(42354510-42354553)
chr8 (17-64)||(42710212-42710259)
chr8 (17-67)||(1179855-1179905)
chr8 (16-60)||(5957964-5958008)
[»] chr2 (16 HSPs)
chr2 (16-68)||(17473154-17473206)
chr2 (17-64)||(10249300-10249347)
chr2 (17-67)||(32505563-32505613)
chr2 (16-65)||(28863589-28863638)
chr2 (17-66)||(38882727-38882776)
chr2 (18-66)||(5574416-5574464)
chr2 (16-64)||(7465653-7465701)
chr2 (16-64)||(19930738-19930786)
chr2 (16-62)||(33436020-33436066)
chr2 (17-66)||(13438478-13438527)
chr2 (19-64)||(27864828-27864873)
chr2 (17-61)||(15428662-15428706)
chr2 (17-64)||(4060820-4060867)
chr2 (17-64)||(28381573-28381620)
chr2 (17-64)||(30915598-30915645)
chr2 (17-64)||(40701613-40701660)
[»] chr1 (13 HSPs)
chr1 (17-65)||(41758940-41758988)
chr1 (17-66)||(48716198-48716247)
chr1 (17-64)||(27564653-27564700)
chr1 (17-60)||(45044482-45044525)
chr1 (17-60)||(50630593-50630636)
chr1 (18-68)||(8346301-8346351)
chr1 (17-63)||(37649333-37649379)
chr1 (19-64)||(9474794-9474839)
chr1 (16-64)||(2582049-2582097)
chr1 (17-64)||(3000454-3000501)
chr1 (17-60)||(32813382-32813425)
chr1 (17-64)||(38595289-38595336)
chr1 (22-64)||(26274569-26274611)
[»] scaffold0237 (1 HSPs)
scaffold0237 (17-64)||(4164-4211)
[»] chr7 (15 HSPs)
chr7 (17-64)||(4999432-4999479)
chr7 (19-64)||(36361843-36361888)
chr7 (19-64)||(36362151-36362196)
chr7 (17-68)||(3434687-3434738)
chr7 (17-64)||(8080301-8080348)
chr7 (17-64)||(19329977-19330024)
chr7 (17-64)||(32951411-32951458)
chr7 (17-60)||(46033723-46033766)
chr7 (17-55)||(19436114-19436152)
chr7 (25-64)||(7389531-7389570)
chr7 (17-64)||(40957842-40957889)
chr7 (17-60)||(46374746-46374789)
chr7 (19-64)||(35137670-35137715)
chr7 (19-64)||(38837354-38837399)
chr7 (16-64)||(11044312-11044360)
[»] chr6 (8 HSPs)
chr6 (17-64)||(11427753-11427800)
chr6 (17-64)||(29857962-29858009)
chr6 (17-64)||(22880576-22880623)
chr6 (17-60)||(31976383-31976426)
chr6 (18-60)||(22422001-22422043)
chr6 (17-64)||(17598689-17598736)
chr6 (17-60)||(28536410-28536453)
chr6 (17-64)||(32869813-32869860)
[»] chr3 (15 HSPs)
chr3 (17-64)||(11095285-11095332)
chr3 (17-60)||(20764837-20764880)
chr3 (18-64)||(49607550-49607596)
chr3 (16-60)||(35965704-35965748)
chr3 (17-65)||(53982146-53982194)
chr3 (17-60)||(8956897-8956940)
chr3 (29-64)||(17470552-17470587)
chr3 (17-60)||(30801655-30801698)
chr3 (17-68)||(31456824-31456875)
chr3 (17-64)||(33644335-33644382)
chr3 (17-60)||(35536761-35536804)
chr3 (17-64)||(54868813-54868860)
chr3 (19-60)||(35093722-35093763)
chr3 (19-64)||(48587019-48587064)
chr3 (16-60)||(14623761-14623805)
[»] chr5 (11 HSPs)
chr5 (16-64)||(18520802-18520850)
chr5 (16-64)||(40145541-40145589)
chr5 (17-60)||(6679833-6679876)
chr5 (17-64)||(33149556-33149603)
chr5 (18-64)||(16115250-16115296)
chr5 (19-64)||(2740411-2740456)
chr5 (16-65)||(31132468-31132517)
chr5 (17-65)||(35785334-35785382)
chr5 (17-64)||(14831949-14831996)
chr5 (17-52)||(26720651-26720686)
chr5 (17-52)||(26990400-26990435)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 65 - 249
Target Start/End: Original strand, 36507687 - 36507871
Alignment:
Q  65 aaaactaaaacatttaaatatgaaagaactcaaaatgtatcaaaaatgatttgacaaaatttttgcaaattctctaaatcatttcctcattttattaaaa 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36507687 aaaactaaaacatttaaatatgaaagaactcaaaatgtatcaaaaatgatttgacaaaatttttgcaaattctctaaatcatttcctcattttattaaaa 36507786  T
Q  165 tctcatcaacaacaacaacaaaatcaatcataactatcttcttgcttccctttcaaacattaatctcaaataaatgaaaaatatc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36507787 tctcatcaacaacaacaacaaaatcaatcataactatcttcttgcttccctttcaaacattaatctcaaataaatgaaaaatatc 36507871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 36507951 - 36508007
Alignment:
Q  245 atatccattttgctcctaactcccaagtcccaagcacatatgactgtacattcacac 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36507951 atatcgattttgctcctaactcccaagtcccaagcacatatgactgtacattcacac 36508007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 6034179 - 6034227
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  6034179 ggtgtacaagggtgtatgagaataaaaggtgtctatgtatcattactca 6034227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 48183014 - 48182966
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  48183014 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactca 48182966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 53352540 - 53352491
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  53352540 aggtgtacaagggtgtatgaaaataaagggtgtctatgtatcattactca 53352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 41236482 - 41236529
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||    
T  41236482 ggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 41236529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11511428 - 11511381
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||    
T  11511428 aggtgtacaagggtgtatggaaataaatg-tgtctatgtatcattactc 11511381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 23608369 - 23608417
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||| || |||||| ||||||| |||||||||||||||||||||    
T  23608369 aggtgtacagggatgtatgggaataaaggatgtctatgtatcattactc 23608417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 41824016 - 41824060
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||| |||||||||||||||||| |||||||||| ||||    
T  41824016 aggtgtacaaaggtgtatgagaataaatggtgtctatgtaacatt 41824060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 24995072 - 24995025
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||| |||||||| ||||||| | |||||||||||||||||||    
T  24995072 ggtgtacaatggtgtatgggaataaagggtgtctatgtatcattactc 24995025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 29234211 - 29234173
Alignment:
Q  26 gggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  29234211 gggtgtatgagaataaatagtgtctatgtatcattactc 29234173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 42044330 - 42044285
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||  |||||| | |||||||||||||||||||    
T  42044330 tgtacaagggtgtatggaaataaagggtgtctatgtatcattactc 42044285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 12831182 - 12831229
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  12831182 ggtgtacaagggtgtatgagaataaatggtgtctatgtatcattactc 12831229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 44507052 - 44507004
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaa 66  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44507052 ggtgtacaagggtgtatgagaataaat-atgtctatgtatcattactcaa 44507004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 504086 - 504039
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  504086 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 504039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 23122562 - 23122515
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  23122562 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 23122515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 34012261 - 34012214
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  34012261 ggtgtacaagggtgtacgagaataaagggtgtctatgtatcattactc 34012214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 9122320 - 9122368
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||    
T  9122320 ggtgtacaagagtgtatgggaataaagaatgtctatgtatcattactca 9122368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 15197467 - 15197515
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||| |||||||   |||||||||||||||||||    
T  15197467 aggtgtacaagggtgtatgggaataaaaagtgtctatgtatcattactc 15197515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 40423909 - 40423865
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||    
T  40423909 aggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 40423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 8841397 - 8841354
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||    
T  8841397 ggtgtacaagagtgtatgagaataaatggtgtctatgtaacatt 8841354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 14548057 - 14548104
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  14548057 ggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 14548104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 42354553 - 42354510
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||    
T  42354553 ggtgtagaagggtgtatgagaataaatggtgtctatgtaacatt 42354510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 42710259 - 42710212
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||| | ||||| |||||||||||||    
T  42710259 ggtgtacaagggtgtatgggaataaagggtgtctgtgtatcattactc 42710212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 1179905 - 1179855
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaaa 67  Q
    ||||||||||| | |||| ||||||| ||||||||| ||||||||||||||    
T  1179905 ggtgtacaaggatatatgggaataaaggatgtctatctatcattactcaaa 1179855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 5957964 - 5958008
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||||||||||| | ||| |||||| ||||    
T  5957964 aggtgtacaagggtgtatgagaataaagggtgtttatgtaacatt 5958008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 17473154 - 17473206
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaaaa 68  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  17473154 aggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaaaa 17473206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 10249347 - 10249300
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  10249347 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 10249300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 32505613 - 32505563
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaaa 67  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  32505613 ggtgtacaagggtgtatgagaataaagagtgtctatgtatcattactcaaa 32505563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 28863589 - 28863638
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  28863589 aggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactca 28863638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 38882776 - 38882727
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaa 66  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||||    
T  38882776 ggtgtacaagggtgtatgggaataaatggtctctatgtatcattactcaa 38882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5574464 - 5574416
Alignment:
Q  18 gtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaa 66  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  5574464 gtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaa 5574416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7465701 - 7465653
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  7465701 aggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 7465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 19930786 - 19930738
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  19930786 aggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattactc 19930738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 33436066 - 33436020
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattac 62  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||||    
T  33436066 aggtgtacaagggtgtatgagaataaaaggtgtctatgcatcattac 33436020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 13438478 - 13438527
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaa 66  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||||    
T  13438478 ggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactcaa 13438527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 27864828 - 27864873
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||    
T  27864828 tgtacaagggtgtatgagaataaagggtgtcaatgtatcattactc 27864873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 15428706 - 15428662
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatta 61  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||    
T  15428706 ggtgtacaagggtgtatgagggtaaatgatgtctatgtaacatta 15428662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 4060820 - 4060867
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||| ||||| |||||||||||||||    
T  4060820 ggtgtacaagggtgtatggaaataaaagatgtttatgtatcattactc 4060867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28381620 - 28381573
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  28381620 ggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 28381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 30915598 - 30915645
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||  |||||||||||||||||||||    
T  30915598 ggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 30915645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 40701613 - 40701660
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||| | |||||||||||||||||||    
T  40701613 ggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 40701660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 41758940 - 41758988
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  41758940 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactca 41758988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 48716247 - 48716198
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaa 66  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  48716247 ggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaa 48716198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27564700 - 27564653
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||    
T  27564700 ggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 27564653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 45044525 - 45044482
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  45044525 ggtgtacaagggtgtatgagaataaatgatgtctacgtaacatt 45044482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 50630593 - 50630636
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  50630593 ggtgtacaagggtgtatgagaataaatggtgtctatgcatcatt 50630636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 8346351 - 8346301
Alignment:
Q  18 gtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaaaa 68  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||||||    
T  8346351 gtgtacaaaggtgtatgagaataaatggtatttatgtatcattactcaaaa 8346301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 37649333 - 37649379
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattact 63  Q
    |||||||||||||||||| ||||||| | ||||||||||||||||||    
T  37649333 ggtgtacaagggtgtatgggaataaagggtgtctatgtatcattact 37649379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9474839 - 9474794
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||||   |||||||||||||||||||    
T  9474839 tgtacaagggtgtatgagaataaagagtgtctatgtatcattactc 9474794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 2582049 - 2582097
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| |||||||| | ||| |||||||||||||||    
T  2582049 aggtgtacaagggtgtattagaataaagggtgtttatgtatcattactc 2582097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 3000454 - 3000501
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||  |||||||||||||||||||||    
T  3000454 ggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 3000501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 32813382 - 32813425
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||    
T  32813382 ggtgtacaagggtgtatgggaataaatggtgtctatgtaacatt 32813425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 38595289 - 38595336
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||  |||||||||||||||||||||    
T  38595289 ggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 38595336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 26274569 - 26274611
Alignment:
Q  22 acaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||| ||||||| | |||||||||||||||||||    
T  26274569 acaagggtgtatgggaataaagggtgtctatgtatcattactc 26274611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 4164 - 4211
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  4164 ggtgtacaagggtgtatgggaataaatggtgtctatgtatcattactc 4211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 4999479 - 4999432
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  4999479 ggtgtacaagggtgtatgagaataaaaggtgtctatgtatcattactc 4999432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 36361888 - 36361843
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    
T  36361888 tgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 36361843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 36362151 - 36362196
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    
T  36362151 tgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 36362196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 3434687 - 3434738
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaaaa 68  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||||||    
T  3434687 ggtgtacaaggctgtatgggaataaagggtgtctatgtatcattactcaaaa 3434738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 8080348 - 8080301
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||    
T  8080348 ggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 8080301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19329977 - 19330024
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||    
T  19329977 ggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 19330024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 32951458 - 32951411
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||    
T  32951458 ggtgtacaagggtgtatgagaataaggggtgtctatgtatcattactc 32951411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 46033766 - 46033723
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  46033766 ggtgtacaagggtgtatgagaataaatggtgtctatgtaacatt 46033723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 19436152 - 19436114
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgta 55  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  19436152 ggtgtacaagggtgtatgagaataaatggtgtctatgta 19436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 7389531 - 7389570
Alignment:
Q  25 agggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  7389531 agggtgtatgggaataaaggatgtctatgtatcattactc 7389570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 40957842 - 40957889
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||| |||||  | |||||||||||||||||||    
T  40957842 ggtgtacaagggtgtatgaaaataatgggtgtctatgtatcattactc 40957889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 46374789 - 46374746
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||    
T  46374789 ggtgtacaagggtgtatgggaataaatggtgtctatgtaacatt 46374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 35137670 - 35137715
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||| ||||| | |||||| ||||||||||    
T  35137670 tgtacaagggtgtatgagaacaaatggtatctatggatcattactc 35137715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 38837354 - 38837399
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||  |||||| | |||||||||||||||||||    
T  38837354 tgtacaagggtgtatggaaataaagggtgtctatgtatcattactc 38837399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11044312 - 11044360
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||| ||||||||| ||||||   |||||||||||||||||||    
T  11044312 aggtgtacaaaggtgtatgaaaataaagagtgtctatgtatcattactc 11044360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 11427753 - 11427800
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  11427753 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 11427800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 29857962 - 29858009
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  29857962 ggtgtacaagggtgtatgggaataaatggtgtctatgtatcattactc 29858009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 22880623 - 22880576
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||    
T  22880623 ggtgtacaagggtgtatgggaataaatggtgtatatgtatcattactc 22880576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 31976383 - 31976426
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  31976383 ggtgtacaagggtgtatgagaataaatggtgtctatgtaacatt 31976426  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 22422043 - 22422001
Alignment:
Q  18 gtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  22422043 gtgtacaagggtgtatgagaataaatggtgtctatgtaacatt 22422001  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 17598689 - 17598736
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||| | |||||||||||||||||||    
T  17598689 ggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 17598736  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 28536453 - 28536410
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  28536453 ggtgtacaagggtgtatgaaaataaatgatgtcgatgtaacatt 28536410  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 32869813 - 32869860
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  32869813 ggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 32869860  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 11095332 - 11095285
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  11095332 ggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 11095285  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 20764880 - 20764837
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  20764880 ggtgtacaagggtgtatgagaataaatggtgtctatgtaacatt 20764837  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 49607550 - 49607596
Alignment:
Q  18 gtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||    
T  49607550 gtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 49607596  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 35965748 - 35965704
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||    
T  35965748 aggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatt 35965704  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 53982146 - 53982194
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    ||||||||||| |||||| ||||||| | ||||||||||||||||||||    
T  53982146 ggtgtacaaggttgtatgggaataaagggtgtctatgtatcattactca 53982194  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 8956897 - 8956940
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||    
T  8956897 ggtgtagaagggtgtatgagaataaatgctgtctatgtaacatt 8956940  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 17470552 - 17470587
Alignment:
Q  29 tgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||| |||||||||||||||||||    
T  17470552 tgtatgagaataaatggtgtctatgtatcattactc 17470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 30801698 - 30801655
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||||||||||||||||||||||| | |||||||||| ||||    
T  30801698 ggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatt 30801655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 31456824 - 31456875
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactcaaaa 68  Q
    |||||||||||||| ||| ||||||| | ||| |||||||||||||||||||    
T  31456824 ggtgtacaagggtgcatgggaataaagggtgtttatgtatcattactcaaaa 31456875  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 33644335 - 33644382
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||| ||||||||||| ||||||| | |||||||||||||||||||    
T  33644335 ggtgtataagggtgtatgggaataaagggtgtctatgtatcattactc 33644382  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 35536761 - 35536804
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||    
T  35536761 ggtgtagaagggtgtatgagaataaatggtgtctatgtaacatt 35536804  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 54868860 - 54868813
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||||||||||  |||||| | |||||||||||||||||||    
T  54868860 ggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 54868813  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 35093722 - 35093763
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||    
T  35093722 tgtacaaaggtgtatgagaataaatgatgtctaggtaacatt 35093763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 48587064 - 48587019
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||| |||| ||||||| | |||||||||||||||||||    
T  48587064 tgtacaagggtatatgggaataaagggtgtctatgtatcattactc 48587019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 14623805 - 14623761
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||| |||| |||||||||||||||| |||||||||| ||||    
T  14623805 aggtgtagaaggatgtatgagaataaatggtgtctatgtaacatt 14623761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 18520850 - 18520802
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||||    
T  18520850 aggtgtacaagggtgtatgaaaataaagggtgtctatgtatcattactc 18520802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 40145541 - 40145589
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||| |||||||||||| | |||||||||||||||||||    
T  40145541 aggtgtacaagggtatatgagaataaagggtgtctatgtatcattactc 40145589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 6679833 - 6679876
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcatt 60  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||    
T  6679833 ggtgtacaagggtgtatgacaataaatgatgtctatgtaacatt 6679876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 33149603 - 33149556
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  33149603 ggtgtacaagggtgtacgagaataaagggtgtctatgtatcattactc 33149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16115296 - 16115250
Alignment:
Q  18 gtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||    
T  16115296 gtgtacaagagtgtatgagaataaagggtgtctatgtatcattactc 16115250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 2740411 - 2740456
Alignment:
Q  19 tgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||| | |||||||||||||||||||    
T  2740411 tgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 2740456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 31132468 - 31132517
Alignment:
Q  16 aggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    |||||||||||||||||||| |||||| | ||| ||||||||||||||||    
T  31132468 aggtgtacaagggtgtatgaaaataaagggtgtttatgtatcattactca 31132517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35785334 - 35785382
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactca 65  Q
    ||||||||||||||||||  |||||| | ||||||||||||||||||||    
T  35785334 ggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactca 35785382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 14831949 - 14831996
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctatgtatcattactc 64  Q
    ||||||||||| |||||| ||||||| | |||||||||||||||||||    
T  14831949 ggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 14831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 26720651 - 26720686
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctat 52  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26720651 ggtgtactagggtgtatgagaataaatgatgtctat 26720686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 26990400 - 26990435
Alignment:
Q  17 ggtgtacaagggtgtatgagaataaatgatgtctat 52  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26990400 ggtgtactagggtgtatgagaataaatgatgtctat 26990435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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